Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GPZ88_RS03595 Genome accession   NZ_CP046919
Coordinates   697112..698611 (-) Length   499 a.a.
NCBI ID   WP_134775673.1    Uniprot ID   A0A6G8HZ78
Organism   Streptococcus ruminicola strain CNU_G2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 692112..703611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS03575 (GPZ88_03545) - 692799..693989 (-) 1191 WP_166043426.1 argininosuccinate synthase -
  GPZ88_RS03580 (GPZ88_03550) amiF 694188..695117 (-) 930 WP_166043428.1 ATP-binding cassette domain-containing protein Regulator
  GPZ88_RS03585 (GPZ88_03555) amiE 695110..696177 (-) 1068 WP_015695757.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS03590 (GPZ88_03560) amiD 696186..697112 (-) 927 WP_015695758.1 oligopeptide ABC transporter permease OppC Regulator
  GPZ88_RS03595 (GPZ88_03565) amiC 697112..698611 (-) 1500 WP_134775673.1 ABC transporter permease Regulator
  GPZ88_RS03600 (GPZ88_03570) amiA 698672..700645 (-) 1974 WP_166043430.1 peptide ABC transporter substrate-binding protein Regulator
  GPZ88_RS03605 (GPZ88_03575) - 700917..702083 (-) 1167 WP_166043432.1 CynX/NimT family MFS transporter -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55542.83 Da        Isoelectric Point: 9.8507

>NTDB_id=409413 GPZ88_RS03595 WP_134775673.1 697112..698611(-) (amiC) [Streptococcus ruminicola strain CNU_G2]
MKKYVFNRILRSLVSIFLVTTLSYAIVFSLVPRKLIFKQDPNYTKIAVTHDKKVDYENTVYERMGYIDYLNTKELVNGSK
KIDKSVTDKGTVADKQLYQNYLDSISGKWKLEKFDSGKYFATREIPIYERLWKFYSNLIVIDHPWKINDPENPKLERYVR
FENDPAVGPALVGSGTQHKYLIYFNSKFPFIHQNIITFNLGISYPSFANIPVLQVITQGQGKTLAQEVTFPTGVTKVSSV
DIYTRSYKSPSKADARDIANYGKGDAYTATQNNYTEPSMISNSLKAGIVGILIAYALGLPIGLLMARYKDGIFDRFSTAT
VTFMLAMPSIATIYVIRFIGANVFGLPDTFPLLGAGDIRSYVMPAIILGILSTPGIVVWFRRYLVDLQGSDFVRFARAKG
LSETEICQDHLFKHAMVPIVNGIPGAIVGTIAGATLTEKIFAFPGMGKMLIDAIASANNTMVIGLVFIFAVLAIFALLVG
DILMTVLDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=409413 GPZ88_RS03595 WP_134775673.1 697112..698611(-) (amiC) [Streptococcus ruminicola strain CNU_G2]
ATGAAAAAATATGTTTTTAATCGAATATTAAGATCCTTAGTTTCTATATTCTTGGTGACAACATTATCATATGCGATTGT
GTTTTCGCTTGTTCCACGAAAACTAATTTTCAAGCAAGACCCTAATTACACCAAAATCGCTGTCACACATGATAAAAAAG
TTGACTATGAGAACACTGTTTATGAGCGCATGGGTTATATCGACTACCTTAATACTAAAGAACTTGTAAATGGTAGCAAA
AAAATCGATAAATCGGTGACTGACAAGGGAACAGTAGCTGATAAGCAATTGTATCAAAACTATCTTGATTCTATTTCTGG
CAAATGGAAGTTAGAAAAATTTGATTCTGGAAAATATTTTGCAACACGTGAAATTCCAATTTATGAACGCCTTTGGAAAT
TTTATTCTAATTTGATTGTGATTGATCATCCGTGGAAAATTAATGATCCAGAAAATCCAAAATTAGAGCGCTATGTACGT
TTTGAAAATGATCCCGCCGTTGGACCAGCGCTTGTTGGATCAGGGACACAGCATAAATATCTCATTTATTTTAATAGCAA
GTTCCCATTTATTCATCAAAATATTATTACTTTCAATTTAGGTATTTCATATCCAAGCTTTGCTAATATTCCTGTATTAC
AGGTTATCACTCAGGGCCAAGGGAAAACTTTAGCACAAGAAGTGACATTCCCAACAGGAGTAACTAAAGTATCATCAGTT
GATATTTATACGCGTTCATATAAATCACCAAGTAAGGCTGATGCTCGTGATATTGCAAATTATGGTAAGGGTGATGCCTA
CACTGCCACTCAAAATAATTACACCGAACCTTCAATGATTTCAAATTCATTGAAAGCAGGTATTGTCGGAATTTTAATTG
CCTATGCTCTTGGTTTGCCAATAGGTCTTTTAATGGCACGTTATAAAGATGGTATTTTTGACCGCTTTTCAACAGCAACT
GTCACTTTCATGCTGGCTATGCCAAGTATTGCTACTATTTACGTGATTCGTTTTATTGGTGCTAATGTGTTTGGTCTACC
AGATACATTTCCATTATTAGGTGCTGGAGATATACGTTCTTACGTAATGCCTGCTATCATTTTGGGAATTTTGAGTACAC
CAGGTATTGTAGTTTGGTTCCGTCGCTATTTAGTGGATTTGCAAGGTAGTGATTTTGTTCGATTTGCGCGTGCAAAAGGT
TTGTCTGAAACAGAAATCTGTCAAGATCATTTGTTTAAACATGCTATGGTTCCAATTGTGAATGGCATTCCTGGAGCAAT
CGTGGGAACTATTGCTGGGGCAACTCTGACTGAGAAAATTTTTGCTTTTCCAGGTATGGGGAAAATGTTGATTGATGCTA
TTGCTTCTGCTAATAATACAATGGTTATCGGCTTAGTATTTATTTTTGCGGTCTTAGCAATTTTTGCACTTCTTGTAGGA
GATATTTTGATGACTGTTCTTGACCCACGTATAAAACTATCATCAAAAGGAGGTAAGTGA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZ78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

60.2

100

0.603
  amiC Streptococcus thermophilus LMG 18311

59.6

100

0.597
  amiC Streptococcus thermophilus LMD-9

59.2

100

0.593

Multiple sequence alignment