Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GPY41_RS19610 Genome accession   NZ_CP046835
Coordinates   2485583..2487367 (-) Length   594 a.a.
NCBI ID   WP_158123882.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2480583..2492367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS19590 - 2481285..2482112 (-) 828 WP_017419662.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  GPY41_RS19595 - 2482192..2483688 (-) 1497 WP_158123880.1 AAA family ATPase -
  GPY41_RS19600 aroB 2483739..2484830 (-) 1092 WP_158123881.1 3-dehydroquinate synthase -
  GPY41_RS19605 aroK 2484863..2485381 (-) 519 WP_011079357.1 shikimate kinase AroK -
  GPY41_RS19610 pilQ 2485583..2487367 (-) 1785 WP_158123882.1 type IV pilus secretin PilQ Machinery gene
  GPY41_RS19615 pilP 2487381..2487893 (-) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  GPY41_RS19620 pilO 2487883..2488473 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY41_RS19625 pilN 2488466..2489056 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  GPY41_RS19630 pilM 2489046..2490053 (-) 1008 WP_158123883.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 64533.62 Da        Isoelectric Point: 4.5316

>NTDB_id=408645 GPY41_RS19610 WP_158123882.1 2485583..2487367(-) (pilQ) [Vibrio vulnificus strain 07-2444]
MICELMMKNKIQLFPGMLSQFVCLLSVCIFTTFANAQSEAENALKSIDFRTNAAKDAIIIVELATPATVVDLKPVAEGLS
IELINTSVKDEQLYLLDVKDFSTVVESIEVFREVSKTRLVANVSGEFRHDYRLSGRYLEVTISRIKSEQEAREQSVLEKE
GKLISINFQDIPVRNVLQLIADYNGFNLVVSDSVTGNVTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPQDELDLR
EKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESVSMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLD
IPVKQVQIEARIVTVNEGNLDELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGGEGGSNSIDDF
LNVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVSF
KKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPL
LGDLPLLGALFRRSYENVGKRELLIFVTPKVILQ

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=408645 GPY41_RS19610 WP_158123882.1 2485583..2487367(-) (pilQ) [Vibrio vulnificus strain 07-2444]
GTGATTTGTGAGTTGATGATGAAAAACAAAATCCAATTGTTTCCGGGAATGCTTTCCCAATTCGTCTGCCTGTTGTCTGT
TTGCATCTTTACCACTTTTGCAAACGCACAATCTGAAGCAGAAAATGCGCTCAAGAGCATCGATTTCAGAACCAATGCAG
CCAAAGATGCGATTATCATCGTTGAATTGGCAACGCCTGCAACCGTGGTGGATTTGAAACCAGTGGCAGAAGGATTGAGC
ATCGAGTTGATCAATACCTCGGTTAAAGATGAGCAGCTCTATCTTCTCGATGTCAAAGATTTTTCGACCGTGGTTGAAAG
TATCGAAGTGTTCAGAGAAGTGTCCAAAACCCGTCTTGTTGCGAATGTTAGCGGTGAATTTCGTCACGACTATCGTCTTT
CTGGACGCTACCTTGAGGTGACCATTTCTCGCATCAAATCGGAGCAAGAAGCCCGTGAACAAAGCGTGTTGGAAAAAGAA
GGCAAGCTGATTTCTATCAACTTCCAAGATATTCCAGTGCGTAACGTTTTGCAGCTTATCGCAGACTACAATGGCTTCAA
CCTCGTGGTGTCTGATTCTGTCACTGGTAATGTGACGTTGAGATTGGACGGCGTACCTTGGCAGCAAGTGCTCGATATCA
TTCTTCAAGTGAAAGGTTTAGATAAACGTGTTGAAGGTAATGTTGTGCTCATCGCTCCTCAAGATGAACTGGATTTGCGA
GAGAAGCAGCAGCTTGAGAAAGAACGTCTGGCGGAAGAGCTTGGTTCCCTCAAATCGGAAATCATCAAAGTCAACTTTGC
TAAAGCGTCAGACATCGCTGAGATGATCAATGGCAAAGAGTCGGTCAGCATGCTGTCAGAACGTGGTAGTGTGGCGATTG
ATGAGCGGACAAACTCTCTTTTGTTGCGTGAGTTACCCGAAAACATCGAAGTGATTCGAGAAATTATCAATTCGTTGGAT
ATCCCAGTCAAACAGGTACAAATTGAAGCGCGCATTGTTACGGTGAATGAAGGCAATCTTGATGAGCTTGGTGTCCGTTG
GGGGTTCACCTCCATCAACGGCAGCACAACCGTCGGCGGTTCTATCGAAAACAACCTAGCAACCATTGGTCTCTACAATG
CAGGTAGTGGGAGTGGCAGTGGTGACTCAGGTAGCGGCGGCAGTGGTGGTGAAGGCGGGTCGAACTCCATTGATGATTTC
CTCAATGTCAATCTTGCTGCGACCTCTGCAAACGCCTCAAGTATTGCTTTCCAAGTGGCTAAATTGGGGTCGGATTTGTT
GTTGGATCTCGAGCTATCAGCACTGCAACGCGAATCAAAAGCGGAAATTATTTCTAGCCCTCGTTTGATCACAACCAATA
AGAAGCCTGCTTATATCGAGCAAGGTACAGAGATTCCTTATCTAGAGTCTTCCTCCAGTGGAGCGACCACGGTTTCCTTT
AAGAAAGCGGTGCTTAGCCTGAAAGTGACCCCTCAGATCACGCCTGACAATCGTCTCGTGTTGGATTTAAGCGTTACACA
AGATAGACCTGGCGAAATTGTCAAAACAGGTACTGGGGAAGCGGTTGCGATTGATACTCAGCGCATCGGTACACAAGTCT
TGGTCAATAATGGTGAAACGGTAGTGTTAGGCGGTATCTTCCAACACAGCATAACCAATACCACGGACAAGGTTCCTCTG
TTAGGCGATTTACCCTTATTGGGTGCGCTTTTCCGCCGTAGCTATGAAAACGTAGGCAAACGTGAATTGCTGATATTTGT
CACTCCTAAGGTTATCTTGCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(260-325)

Bacterial type II and III secretion system protein (Secretin)

(434-592)

Secretin and TonB N terminus short domain (STN)

(186-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

77.966

99.327

0.774
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

73.729

99.327

0.732
  pilQ Vibrio cholerae strain A1552

73.729

99.327

0.732
  pilQ Legionella pneumophila strain ERS1305867

41.429

94.276

0.391
  pilQ Legionella pneumophila strain Lp02

41.429

94.276

0.391
  pilQ Pseudomonas aeruginosa PAK

38.261

96.801

0.37
  comQ Acinetobacter baylyi ADP1

37.162

99.663

0.37

Multiple sequence alignment