Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GPY41_RS19625 Genome accession   NZ_CP046835
Coordinates   2488466..2489056 (-) Length   196 a.a.
NCBI ID   WP_011079353.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2483466..2494056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS19600 aroB 2483739..2484830 (-) 1092 WP_158123881.1 3-dehydroquinate synthase -
  GPY41_RS19605 aroK 2484863..2485381 (-) 519 WP_011079357.1 shikimate kinase AroK -
  GPY41_RS19610 pilQ 2485583..2487367 (-) 1785 WP_158123882.1 type IV pilus secretin PilQ Machinery gene
  GPY41_RS19615 pilP 2487381..2487893 (-) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  GPY41_RS19620 pilO 2487883..2488473 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY41_RS19625 pilN 2488466..2489056 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  GPY41_RS19630 pilM 2489046..2490053 (-) 1008 WP_158123883.1 type IV pilus assembly protein PilM Machinery gene
  GPY41_RS19635 - 2490193..2492706 (+) 2514 WP_158123884.1 penicillin-binding protein 1A -
  GPY41_RS19640 oxyR 2492778..2493674 (-) 897 WP_053543468.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22672.91 Da        Isoelectric Point: 7.6441

>NTDB_id=408648 GPY41_RS19625 WP_011079353.1 2488466..2489056(-) (pilN) [Vibrio vulnificus strain 07-2444]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=408648 GPY41_RS19625 WP_011079353.1 2488466..2489056(-) (pilN) [Vibrio vulnificus strain 07-2444]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTTGGTATTCAGTGGGGTATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAATATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCCCGACTCAAGGTTGTCGAATCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAGCTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACTAATGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCTACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment