Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY41_RS19615 Genome accession   NZ_CP046835
Coordinates   2487381..2487893 (-) Length   170 a.a.
NCBI ID   WP_038940290.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2482381..2492893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS19600 aroB 2483739..2484830 (-) 1092 WP_158123881.1 3-dehydroquinate synthase -
  GPY41_RS19605 aroK 2484863..2485381 (-) 519 WP_011079357.1 shikimate kinase AroK -
  GPY41_RS19610 pilQ 2485583..2487367 (-) 1785 WP_158123882.1 type IV pilus secretin PilQ Machinery gene
  GPY41_RS19615 pilP 2487381..2487893 (-) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  GPY41_RS19620 pilO 2487883..2488473 (-) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY41_RS19625 pilN 2488466..2489056 (-) 591 WP_011079353.1 PilN domain-containing protein Machinery gene
  GPY41_RS19630 pilM 2489046..2490053 (-) 1008 WP_158123883.1 type IV pilus assembly protein PilM Machinery gene
  GPY41_RS19635 - 2490193..2492706 (+) 2514 WP_158123884.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19048.16 Da        Isoelectric Point: 10.2810

>NTDB_id=408646 GPY41_RS19615 WP_038940290.1 2487381..2487893(-) (pilP) [Vibrio vulnificus strain 07-2444]
MRSSLSLVAVLILLSGCRANTEPMEGFIRQVESEARQEMAKLQPEREYIPIDYLARENRRPFELPKEAVIASQPVVKKDC
WQPPSRAKNGKLERYPLSQLRLKGVMGSGNTIAGLVQTPQGKVEKVHPGQFIGQNNGKVTVVTPSYILINETLPDGLGCW
QQRKVRLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=408646 GPY41_RS19615 WP_038940290.1 2487381..2487893(-) (pilP) [Vibrio vulnificus strain 07-2444]
ATGAGAAGTAGTTTATCGCTCGTCGCTGTGCTGATCTTGCTATCGGGTTGTCGAGCGAATACCGAACCGATGGAAGGTTT
TATCCGCCAAGTTGAATCGGAAGCGCGTCAAGAAATGGCCAAGTTACAACCAGAGCGTGAGTACATCCCGATTGATTACT
TAGCTCGAGAAAATCGCCGTCCTTTTGAGTTACCTAAGGAAGCCGTGATTGCCTCTCAACCTGTCGTTAAGAAAGACTGC
TGGCAGCCACCATCGCGGGCTAAAAATGGCAAGTTGGAGCGCTATCCACTTAGCCAATTACGTCTGAAAGGGGTGATGGG
GAGTGGCAATACCATTGCCGGTCTCGTACAGACCCCTCAAGGCAAAGTGGAGAAAGTACACCCAGGGCAATTTATCGGCC
AGAACAATGGCAAAGTGACCGTAGTAACGCCGTCTTACATATTGATCAATGAAACCCTTCCTGATGGTTTAGGTTGCTGG
CAGCAACGTAAAGTCAGACTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

64.072

98.235

0.629
  pilP Vibrio cholerae strain A1552

59.375

94.118

0.559

Multiple sequence alignment