Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY16_RS03325 Genome accession   NZ_CP046832
Coordinates   675300..676526 (-) Length   408 a.a.
NCBI ID   WP_061058909.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670300..681526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS03285 rpsP 670505..670753 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  GPY16_RS03290 rimM 670769..671317 (+) 549 WP_038941427.1 ribosome maturation factor RimM -
  GPY16_RS03295 trmD 671345..672094 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GPY16_RS03300 rplS 672136..672489 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  GPY16_RS03305 yacG 672697..672891 (-) 195 WP_039536083.1 DNA gyrase inhibitor YacG -
  GPY16_RS03310 zapD 672954..673694 (-) 741 WP_017421189.1 cell division protein ZapD -
  GPY16_RS03315 coaE 673727..674335 (-) 609 WP_039536087.1 dephospho-CoA kinase -
  GPY16_RS03320 pilD 674337..675206 (-) 870 WP_038941424.1 A24 family peptidase Machinery gene
  GPY16_RS03325 pilC 675300..676526 (-) 1227 WP_061058909.1 type II secretion system F family protein Machinery gene
  GPY16_RS03330 pilB 676574..678262 (-) 1689 WP_158104985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY16_RS03335 pilA 678266..678703 (-) 438 WP_038941421.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GPY16_RS03340 nadC 678926..679813 (-) 888 WP_072600771.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY16_RS03345 ampD 679906..680478 (+) 573 WP_102982150.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45241.59 Da        Isoelectric Point: 10.3569

>NTDB_id=408590 GPY16_RS03325 WP_061058909.1 675300..676526(-) (pilC) [Vibrio vulnificus strain 06-2410]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=408590 GPY16_RS03325 WP_061058909.1 675300..676526(-) (pilC) [Vibrio vulnificus strain 06-2410]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCAGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTCAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGTACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCATTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTTATTACGTTGTTCAGTGCTATCTATTTA
CTTCGCGGTCTAAGCAAGAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTTTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGCTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGAATGCCAATGTACATTGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTACAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTTGTCGTCGGCGGATTAGTCGCCGCCATGTACCTGCCGATC
TTTAACTTAATGAGTGTTATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.299

98.529

0.397

Multiple sequence alignment