Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   H0S59_RS15490 Genome accession   NZ_CP059078
Coordinates   3336036..3336398 (-) Length   120 a.a.
NCBI ID   WP_002051151.1    Uniprot ID   A0AA36K978
Organism   Acinetobacter nosocomialis strain WM98B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3331036..3341398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S59_RS15480 (H0S59_15490) - 3333314..3335395 (-) 2082 WP_004885376.1 methyl-accepting chemotaxis protein -
  H0S59_RS15485 (H0S59_15495) - 3335442..3335978 (-) 537 WP_004885375.1 chemotaxis protein CheW -
  H0S59_RS15490 (H0S59_15500) pilH 3336036..3336398 (-) 363 WP_002051151.1 PleD family two-component system response regulator Machinery gene
  H0S59_RS15495 (H0S59_15505) pilG 3336425..3336808 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  H0S59_RS15500 (H0S59_15510) - 3337091..3337729 (+) 639 WP_004885373.1 hypothetical protein -
  H0S59_RS15505 (H0S59_15515) - 3337789..3338907 (+) 1119 WP_004885371.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.49 Da        Isoelectric Point: 4.9102

>NTDB_id=408545 H0S59_RS15490 WP_002051151.1 3336036..3336398(-) (pilH) [Acinetobacter nosocomialis strain WM98B]
MARILIVDDSPTETYRFREILTKHGYDVIEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGALDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=408545 H0S59_RS15490 WP_002051151.1 3336036..3336398(-) (pilH) [Acinetobacter nosocomialis strain WM98B]
ATGGCACGTATTCTTATTGTTGATGACTCACCAACAGAAACTTATCGTTTTAGAGAAATTCTAACTAAGCACGGTTACGA
TGTAATTGAAGCATCTAATGGTGCAGATGGTGTAACTTTGGCAAAAGCAGAACAGCCTGACTTAGTGTTAATGGATGTTG
TAATGCCAGGTGTAAATGGCTTTCAGGCAACACGCCAGATTACCCGTGATGAAGACACTAAGCATATTCCAGTTGTTATT
GTAAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAGGGTGCTCTCGATTACTTGATTAAGCCTATTGA
AGAAAAGCAACTGATCGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment