Detailed information NTG0408544

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY55_RS11005
• Genome accession: NZ_CP046831
• Coordinates: 377081..377950 (-)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain 2012AW-0224
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 372081..382950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY55_RS10970	rpsP	373098..373346 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
GPY55_RS10975	rimM	373375..373923 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY55_RS10980	trmD	373951..374694 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY55_RS10985	rplS	374736..375089 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY55_RS10990	yacG	375435..375629 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY55_RS10995	zapD	375698..376438 (-)	741	WP_083135490.1	cell division protein ZapD	-
GPY55_RS11000	coaE	376466..377080 (-)	615	WP_031847490.1	dephospho-CoA kinase	-
GPY55_RS11005	pilD	377081..377950 (-)	870	WP_025533026.1	A24 family peptidase	Machinery gene
GPY55_RS11010	pilC	378015..379238 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GPY55_RS11015	pilB	379263..380948 (-)	1686	WP_031847489.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY55_RS11020	-	380948..381412 (-)	465	WP_023585961.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
GPY55_RS11025	nadC	381676..382563 (-)	888	WP_031847488.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=408544 GPY55_RS11005 WP_025533026.1 377081..377950(-) (pilD) [Vibrio parahaemolyticus strain 2012AW-0224]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=408544 GPY55_RS11005 WP_025533026.1 377081..377950(-) (pilD) [Vibrio parahaemolyticus strain 2012AW-0224]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTATGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45