Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GPY06_RS11240 Genome accession   NZ_CP046820
Coordinates   1199362..1201077 (-) Length   571 a.a.
NCBI ID   WP_167517861.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1194362..1206077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS11220 - 1195103..1195936 (-) 834 WP_000744677.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  GPY06_RS11225 - 1196006..1197484 (-) 1479 WP_095475744.1 AAA family ATPase -
  GPY06_RS11230 aroB 1197538..1198623 (-) 1086 WP_167517860.1 3-dehydroquinate synthase -
  GPY06_RS11235 aroK 1198651..1199175 (-) 525 WP_000818614.1 shikimate kinase AroK -
  GPY06_RS11240 pilQ 1199362..1201077 (-) 1716 WP_167517861.1 type IV pilus secretin PilQ Machinery gene
  GPY06_RS11245 pilP 1201103..1201621 (-) 519 WP_000794742.1 pilus assembly protein PilP Machinery gene
  GPY06_RS11250 pilO 1201611..1202201 (-) 591 WP_000135851.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY06_RS11255 pilN 1202194..1202772 (-) 579 WP_167517862.1 PilN domain-containing protein Machinery gene
  GPY06_RS11260 pilM 1202762..1203778 (-) 1017 WP_158120071.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 62352.49 Da        Isoelectric Point: 4.7319

>NTDB_id=408358 GPY06_RS11240 WP_167517861.1 1199362..1201077(-) (pilQ) [Vibrio metoecus strain 2011V-1015]
MKNGLKTYVAQAWLTLWVGLVLCAASVAHSAESASTNQLQNIDFRVNKDKAAVLIVELASPSVVVDVQKVQEGLSIELLK
TDVADDKLYLLDVKDFSTPVQSIEVFRKEPSTQLIATIDGEFKHDYSLKGKYLEVVISKLKADEKPQPKSILEKEGKLIS
INFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQ
VQIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGSIESNLWQQGLLADDKFPVDQFLNVNLASTSANASSIAFQVAKLG
SDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVSFKKAVLSLKVTPQITPDNRLVLDL
SVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL
LIFVTPKVVIQ

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=408358 GPY06_RS11240 WP_167517861.1 1199362..1201077(-) (pilQ) [Vibrio metoecus strain 2011V-1015]
ATGAAAAATGGATTGAAAACTTATGTCGCACAGGCTTGGCTGACCTTATGGGTTGGTTTGGTGCTTTGTGCTGCTTCCGT
AGCGCATAGCGCGGAGTCGGCTTCTACCAATCAACTGCAAAATATTGATTTTCGGGTTAATAAAGACAAAGCCGCAGTGC
TGATTGTGGAGTTGGCTTCCCCCTCTGTTGTCGTGGATGTTCAAAAAGTCCAAGAAGGGCTGAGTATTGAACTGCTAAAA
ACGGATGTGGCAGATGACAAACTTTACTTATTGGATGTAAAGGACTTTTCTACGCCAGTGCAAAGCATAGAAGTGTTCCG
CAAAGAACCTAGCACTCAATTGATTGCGACCATTGATGGTGAGTTTAAACATGACTACAGCTTGAAAGGAAAATATTTGG
AGGTGGTGATCAGTAAGCTTAAAGCGGATGAAAAACCACAGCCGAAAAGTATTCTAGAGAAAGAAGGTAAGCTCATTTCA
ATTAACTTCCAAGATATTCCAGTGCGTAACGTGTTGCAGCTGATTGCCGATTATAACGGCTTCAACTTAGTAGTATCGGA
CTCGGTGGTCGGTAACCTGACGTTACGCTTGGATGGGGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAGG
GCTTAGATAAGCGTGTTGATGGTAACGTTATTCTCATCGCACCCAAAGAAGAACTGGATTTACGAGAAAAGCAGGCCTTA
GAGAAAGCGCGTTTAGCGGAAGAGCTGGGTGATTTAAAATCAGAAATCATCAAAATCAATTTTGCTAAAGCTTCAGATAT
CGCCGCCATGATTGGGGGAGAAGGTAACGTTAACATGCTCTCTGAGCGTGGTTCGATCAGCATCGATGAGCGTACGAACT
CACTGTTGATCCGAGAGTTACCCGATAATATTGCCGTGATCCGTGAGATCATCGAATCGCTGGATATTCCGGTTAAGCAA
GTGCAAATTGAAGCACGTATCGTCACCGTCAAAGAAGGTAATTTGGATGAGCTGGGTGTGCGTTGGGGCGTAATGTCAAC
CAATGGCAGTCATTCGGTCGGCGGGAGTATTGAAAGTAACTTATGGCAACAAGGGCTTTTGGCTGACGATAAGTTTCCGG
TCGATCAGTTCTTAAACGTCAATTTAGCATCCACTTCAGCGAACGCTTCCTCCATCGCTTTCCAAGTGGCTAAGCTAGGG
TCCGATACCTTGTTGGATTTGGAGCTCTCCGCATTACAAAACGAGTCGAAAGCAGAAATTATCTCTAGCCCCCGTTTGAT
TACGACCAATAAACAGCCTGCATACATCGAACAGGGTACTGAAATCCCGTACCTTGAGTCCTCATCGAGTGGGGCCTCTA
CGGTATCGTTTAAAAAAGCGGTATTGAGCTTGAAAGTTACCCCACAAATTACACCTGATAACCGTCTGGTGTTGGATTTG
AGTGTGACTCAGGACCGCCGTGGTGAAACGGTGAAAACCGGTACAGGGGAAGCGGTCTCGATCGACACTCAGCGTATTGG
CACACAAGTGTTAGTGAATAATGGAGAAACTGTCGTCTTAGGTGGCATTTTCCAACACAGCATCAATAATTCAGTGGATA
AGGTGCCATTGCTTGGAGACCTGCCAGTTTTGGGTGCGCTATTTAGACGAACGTACGAGCAAATGGGCAAAAGTGAGCTG
TTGATTTTCGTCACGCCGAAAGTGGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(411-569)

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

95.447

100

0.954
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

95.447

100

0.954
  pilQ Vibrio campbellii strain DS40M4

78.909

96.322

0.76
  pilQ Legionella pneumophila strain ERS1305867

42.989

94.921

0.408
  pilQ Legionella pneumophila strain Lp02

42.989

94.921

0.408
  comQ Acinetobacter baylyi ADP1

39.619

100

0.401
  pilQ Acinetobacter baumannii D1279779

38.055

100

0.391
  pilQ Acinetobacter baumannii strain A118

38.055

100

0.391
  pilQ Pseudomonas aeruginosa PAK

39.13

96.673

0.378

Multiple sequence alignment