Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY06_RS11155 Genome accession   NZ_CP046820
Coordinates   1178957..1179589 (+) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio metoecus strain 2011V-1015     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1173957..1184589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS11130 - 1174044..1175960 (+) 1917 WP_055033420.1 ABC transporter ATP-binding protein -
  GPY06_RS11135 - 1175961..1176446 (+) 486 WP_001278740.1 TIGR02444 family protein -
  GPY06_RS11140 - 1176443..1177432 (+) 990 WP_158120063.1 hydrolase -
  GPY06_RS11145 - 1177541..1177750 (+) 210 WP_000586572.1 YheU family protein -
  GPY06_RS11150 - 1177845..1178714 (+) 870 WP_001274669.1 phosphoribulokinase -
  GPY06_RS11155 crp 1178957..1179589 (+) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY06_RS11160 - 1179652..1180443 (-) 792 WP_158120064.1 DUF1338 domain-containing protein -
  GPY06_RS11165 astD 1180591..1182048 (-) 1458 WP_158120065.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY06_RS11170 astA 1182058..1183077 (-) 1020 WP_000962038.1 arginine N-succinyltransferase -
  GPY06_RS11175 - 1183209..1184420 (-) 1212 WP_158120066.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=408357 GPY06_RS11155 WP_000242749.1 1178957..1179589(+) (crp) [Vibrio metoecus strain 2011V-1015]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408357 GPY06_RS11155 WP_000242749.1 1178957..1179589(+) (crp) [Vibrio metoecus strain 2011V-1015]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGTTGATCCACGCCGGTGAAAAAGCGGAAACGCTGTACTACATCGTGAAAGGTTCAGTGGCGGTACTGATTAAAG
ATGAAGAAGGTAAAGAGATGATCCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAACTTGGCTTGTTTGAAGAAGGC
CAAGAACGTACCGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACGGGCCGTATCGCTCAAACTCTGCTGAACCTTGCGCGTCAGCCAGATGCGATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGTTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment