Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY28_RS23485 | Genome accession | NZ_CP046814 |
| Coordinates | 3059103..3059531 (+) | Length | 142 a.a. |
| NCBI ID | WP_050912911.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain 2010V-1102 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3054103..3064531
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY28_RS23470 | pdhR | 3056133..3056900 (-) | 768 | WP_005379989.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY28_RS23475 | ampD | 3057306..3057857 (-) | 552 | WP_042521337.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY28_RS23480 | nadC | 3057950..3058837 (+) | 888 | WP_158159766.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY28_RS23485 | pilA | 3059103..3059531 (+) | 429 | WP_050912911.1 | pilin | Machinery gene |
| GPY28_RS23490 | pilB | 3059531..3061216 (+) | 1686 | WP_158159767.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY28_RS23495 | pilC | 3061240..3062463 (+) | 1224 | WP_017635918.1 | type II secretion system F family protein | Machinery gene |
| GPY28_RS23500 | pilD | 3062528..3063397 (+) | 870 | WP_158159768.1 | A24 family peptidase | Machinery gene |
| GPY28_RS23505 | coaE | 3063398..3064012 (+) | 615 | WP_158159769.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14510.54 Da Isoelectric Point: 5.7554
>NTDB_id=408235 GPY28_RS23485 WP_050912911.1 3059103..3059531(+) (pilA) [Vibrio alginolyticus strain 2010V-1102]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADGDAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSEAAAGLATLRSLTTNIDTFIADTGTFPADGDAPTLGAA
VDMNKLGTISFADSGASGATATFTFDGTASALASTDTVVLAKDATTGLWTCSHSTGVTLKGC
Nucleotide
Download Length: 429 bp
>NTDB_id=408235 GPY28_RS23485 WP_050912911.1 3059103..3059531(+) (pilA) [Vibrio alginolyticus strain 2010V-1102]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACTTTCATTGCTGATACTGGCACCTTTCCTGCTGATGGCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCTACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACCCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCTATTCCACAGTATCAGAATTATGTAAAAAAATCAGAGGCTGCAGCTGGGCTTGCAACTCTTCGTTCAC
TAACTACAAATATTGATACTTTCATTGCTGATACTGGCACCTTTCCTGCTGATGGCGACGCACCCACGTTAGGTGCTGCT
GTTGATATGAACAAACTTGGAACAATTTCTTTTGCAGATAGTGGTGCATCGGGAGCTACAGCAACGTTTACTTTTGATGG
TACAGCTAGCGCACTAGCTTCTACTGATACCGTTGTCCTTGCGAAGGATGCAACTACCGGACTTTGGACCTGCTCTCATA
GTACTGGCGTAACTCTAAAAGGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae strain A1552 |
51.299 |
100 |
0.556 |
| pilA | Vibrio cholerae C6706 |
51.299 |
100 |
0.556 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
48.252 |
100 |
0.486 |
| pilA | Pseudomonas aeruginosa PAK |
45.27 |
100 |
0.472 |
| pilA | Acinetobacter baumannii strain A118 |
35.948 |
100 |
0.387 |