Detailed information NTG0408238

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY28_RS23500
• Genome accession: NZ_CP046814
• Coordinates: 3062528..3063397 (+)
• Length: 289 a.a.
• NCBI ID: WP_158159768.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain 2010V-1102
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3057528..3068397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY28_RS23480	nadC	3057950..3058837 (+)	888	WP_158159766.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY28_RS23485	pilA	3059103..3059531 (+)	429	WP_050912911.1	pilin	Machinery gene
GPY28_RS23490	pilB	3059531..3061216 (+)	1686	WP_158159767.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY28_RS23495	pilC	3061240..3062463 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
GPY28_RS23500	pilD	3062528..3063397 (+)	870	WP_158159768.1	A24 family peptidase	Machinery gene
GPY28_RS23505	coaE	3063398..3064012 (+)	615	WP_158159769.1	dephospho-CoA kinase	-
GPY28_RS23510	zapD	3064040..3064780 (+)	741	WP_005373086.1	cell division protein ZapD	-
GPY28_RS23515	yacG	3064939..3065133 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
GPY28_RS23520	rplS	3065788..3066141 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
GPY28_RS23525	trmD	3066183..3066944 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY28_RS23530	rimM	3066972..3067520 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
GPY28_RS23535	rpsP	3067550..3067798 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32585.77 Da
• Isoelectric Point: 7.0195

>NTDB_id=408238 GPY28_RS23500 WP_158159768.1 3062528..3063397(+) (pilD) [Vibrio alginolyticus strain 2010V-1102]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIVLALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGFIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=408238 GPY28_RS23500 WP_158159768.1 3062528..3063397(+) (pilD) [Vibrio alginolyticus strain 2010V-1102]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGTCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCCTCTGTGGTTGGCATC
GTATTTGGCTTCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.648	94.464	0.488
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	47.826	95.502	0.457