Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY43_RS09480 Genome accession   NZ_CP046797
Coordinates   2062780..2064006 (+) Length   408 a.a.
NCBI ID   WP_004729085.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2013V-1001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057780..2069006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY43_RS09455 fldB 2058164..2058685 (+) 522 WP_004729075.1 flavodoxin FldB -
  GPY43_RS09460 ampD 2058720..2059274 (-) 555 WP_004729077.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY43_RS09465 nadC 2059423..2060310 (+) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY43_RS09470 - 2060557..2061006 (+) 450 WP_055466517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GPY43_RS09475 pilB 2061013..2062701 (+) 1689 WP_158107764.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY43_RS09480 pilC 2062780..2064006 (+) 1227 WP_004729085.1 type II secretion system F family protein Machinery gene
  GPY43_RS09485 pilD 2064058..2064927 (+) 870 WP_004729087.1 A24 family peptidase Machinery gene
  GPY43_RS09490 coaE 2064930..2065538 (+) 609 WP_158107765.1 dephospho-CoA kinase -
  GPY43_RS09495 zapD 2065571..2066311 (+) 741 WP_004729090.1 cell division protein ZapD -
  GPY43_RS09500 yacG 2066369..2066566 (+) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  GPY43_RS09505 parC 2066659..2068932 (-) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.05 Da        Isoelectric Point: 10.5674

>NTDB_id=407950 GPY43_RS09480 WP_004729085.1 2062780..2064006(+) (pilC) [Vibrio furnissii strain 2013V-1001]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVVGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=407950 GPY43_RS09480 WP_004729085.1 2062780..2064006(+) (pilC) [Vibrio furnissii strain 2013V-1001]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGGCGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATTGAGGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAGGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGCGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGTGTACCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCATCGCAAAGCAGAAATGAAATCGATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCAGGCACCCCGATGTCCAAAGCGATGCGCACTGCCAGCCCACATTTTGATGCGC
TATACGTTGACCTTATTGCCACCGGCGAGCAATCCGGGAATTTGGCCGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTGCGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCAATGGTGATGTTGGTCGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGTGCAGAACTCCCTTGGTTTACCC
AGCAAATTCTAAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGCGTACTGGCGACCAGCGCTGGCCTATTGGCG
CTCAAAACCGCGCGCAACAAATCATTGGTCTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGATTTCCTGTTGTTGGTGC
GGTATTAGCCAAGGCTGCCATTGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCAATTCTGGCCA
GTTTAAAAACCACCGCCAAAACCGCCGGCAACGTCCATTTTGAAACCGCGATTCAAGAGGTACATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTAATGATTGGCGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GGAAAATTCTCGAGCCGCTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.559

100

0.846
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Pseudomonas stutzeri DSM 10701

42.716

99.265

0.424
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria gonorrhoeae MS11

38.916

99.51

0.387
  pilG Neisseria meningitidis 44/76-A

38.67

99.51

0.385

Multiple sequence alignment