Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | GPY38_RS00635 | Genome accession | NZ_CP046795 |
| Coordinates | 130766..132454 (-) | Length | 562 a.a. |
| NCBI ID | WP_158140195.1 | Uniprot ID | - |
| Organism | Vibrio furnissii strain 2420-04 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 125766..137454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY38_RS00610 | yacG | 126901..127098 (-) | 198 | WP_004729092.1 | DNA gyrase inhibitor YacG | - |
| GPY38_RS00615 | zapD | 127156..127896 (-) | 741 | WP_004729090.1 | cell division protein ZapD | - |
| GPY38_RS00620 | coaE | 127929..128537 (-) | 609 | WP_158140193.1 | dephospho-CoA kinase | - |
| GPY38_RS00625 | pilD | 128540..129409 (-) | 870 | WP_014204458.1 | A24 family peptidase | Machinery gene |
| GPY38_RS00630 | pilC | 129461..130687 (-) | 1227 | WP_004729085.1 | type II secretion system F family protein | Machinery gene |
| GPY38_RS00635 | pilB | 130766..132454 (-) | 1689 | WP_158140195.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY38_RS00640 | - | 132461..132910 (-) | 450 | WP_158140197.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| GPY38_RS00645 | nadC | 133158..134045 (-) | 888 | WP_154180385.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY38_RS00650 | ampD | 134196..134750 (+) | 555 | WP_158140199.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY38_RS00655 | fldB | 134786..135307 (-) | 522 | WP_004729075.1 | flavodoxin FldB | - |
| GPY38_RS00660 | xerD | 135502..136356 (+) | 855 | WP_231623439.1 | site-specific tyrosine recombinase XerD | - |
| GPY38_RS00665 | dsbC | 136373..137137 (+) | 765 | WP_055466521.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
Sequence
Protein
Download Length: 562 a.a. Molecular weight: 62087.21 Da Isoelectric Point: 6.1994
>NTDB_id=407896 GPY38_RS00635 WP_158140195.1 130766..132454(-) (pilB) [Vibrio furnissii strain 2420-04]
MLTNLIAILRQAKLISPTQEQAVMDHIHASGATVPEALIDLAIFHHHDLTEQLSQIFGLPETDLTRFDYAPLCQQLGLRE
LITRYQALPLHNNGQILTLAVADPTHLQVEDEFRFATGLQVELVLADHKALHAAIRRLYGRSLATPGTQGKEISQDELAD
LVQISDDEKTTIEDLSQDDSPVSRFINQILLDAVRKGASDIHFEPYESHYRIRLRCDGILVETQQPASHLSRRLAARIKI
LSKLDIAERRLPQDGRIKLRLDADTAIDMRVSTLPTLWGEKIVLRLLDSSAANLNIDKLGYNEQQKQLYLAALTKPQGMI
LMTGPTGSGKTVSLYTGLRILNTEQVNISTAEDPVEINLPGINQVQVQPKIGFGFAQALRSFLRQDPDVVMVGEIRDLET
AEIAIKAAQTGHLVLSTLHTNSAAETVIRLANMGIEPFNLASSLSLIIAQRLARRLCPHCKVAITPPAAPQQQFGLLAED
AVYEAHPSGCTECTNGYSGRVGIYEVMAFHPALADAVMQRASIHQIETIAQQHGMQPLLQSGIEKLRAGITSFSELQRVL
YF
MLTNLIAILRQAKLISPTQEQAVMDHIHASGATVPEALIDLAIFHHHDLTEQLSQIFGLPETDLTRFDYAPLCQQLGLRE
LITRYQALPLHNNGQILTLAVADPTHLQVEDEFRFATGLQVELVLADHKALHAAIRRLYGRSLATPGTQGKEISQDELAD
LVQISDDEKTTIEDLSQDDSPVSRFINQILLDAVRKGASDIHFEPYESHYRIRLRCDGILVETQQPASHLSRRLAARIKI
LSKLDIAERRLPQDGRIKLRLDADTAIDMRVSTLPTLWGEKIVLRLLDSSAANLNIDKLGYNEQQKQLYLAALTKPQGMI
LMTGPTGSGKTVSLYTGLRILNTEQVNISTAEDPVEINLPGINQVQVQPKIGFGFAQALRSFLRQDPDVVMVGEIRDLET
AEIAIKAAQTGHLVLSTLHTNSAAETVIRLANMGIEPFNLASSLSLIIAQRLARRLCPHCKVAITPPAAPQQQFGLLAED
AVYEAHPSGCTECTNGYSGRVGIYEVMAFHPALADAVMQRASIHQIETIAQQHGMQPLLQSGIEKLRAGITSFSELQRVL
YF
Nucleotide
Download Length: 1689 bp
>NTDB_id=407896 GPY38_RS00635 WP_158140195.1 130766..132454(-) (pilB) [Vibrio furnissii strain 2420-04]
ATGCTTACCAACCTTATCGCCATTCTGCGTCAGGCTAAGTTGATCAGCCCAACGCAGGAACAGGCCGTAATGGATCATAT
TCACGCTTCCGGTGCCACGGTGCCGGAGGCGTTGATCGATTTGGCGATATTTCATCATCACGATTTAACCGAGCAACTAA
GTCAGATCTTTGGCCTACCCGAAACCGATCTCACTCGGTTTGATTACGCGCCATTGTGCCAGCAGTTGGGACTTCGAGAA
CTCATCACCCGCTACCAAGCCCTGCCGCTGCACAACAATGGCCAAATCCTGACGTTGGCGGTTGCTGACCCAACTCACCT
GCAAGTCGAAGACGAGTTTCGCTTTGCCACCGGATTACAGGTGGAACTGGTGCTCGCCGATCATAAAGCGCTGCACGCCG
CCATTCGCCGCTTGTATGGGCGCAGCCTCGCGACGCCGGGGACGCAAGGCAAAGAGATCAGTCAGGATGAATTGGCGGAT
CTGGTACAGATCTCTGACGACGAAAAAACCACCATTGAAGATCTCAGCCAAGATGATTCACCGGTCAGTCGTTTTATCAA
CCAGATCCTACTCGATGCCGTGCGCAAAGGTGCGTCCGACATTCACTTTGAGCCGTATGAGTCCCACTACCGTATTCGTC
TGCGCTGTGACGGCATTCTGGTCGAAACCCAACAACCTGCCAGTCACCTCAGCCGACGCTTGGCAGCCCGAATCAAAATT
TTGTCGAAACTGGATATTGCCGAGCGCCGCCTCCCGCAAGATGGACGCATCAAACTGCGCTTGGATGCCGACACCGCGAT
TGATATGCGTGTATCGACCTTGCCAACATTGTGGGGTGAAAAGATTGTTCTGCGCTTACTCGATAGCAGCGCGGCCAACC
TCAACATCGACAAACTCGGCTACAACGAACAGCAGAAACAGCTCTACCTCGCGGCCCTCACCAAACCGCAAGGCATGATC
TTAATGACCGGCCCAACCGGCAGCGGCAAAACCGTGTCGCTCTACACCGGATTACGCATTCTCAATACCGAACAAGTGAA
CATCTCCACCGCCGAAGATCCGGTGGAAATCAACCTGCCCGGTATCAATCAGGTGCAAGTTCAACCCAAAATCGGCTTTG
GCTTTGCACAAGCGCTGCGCTCGTTTCTACGCCAAGATCCCGATGTGGTGATGGTGGGCGAAATTCGCGATCTAGAAACC
GCAGAAATCGCCATTAAAGCCGCGCAAACTGGGCACTTAGTGCTCTCAACCTTGCACACCAACTCGGCCGCGGAAACCGT
GATTCGTTTAGCCAACATGGGCATTGAACCCTTTAACCTTGCCTCATCATTGAGCCTGATCATTGCGCAGCGGCTGGCCC
GCCGTTTGTGCCCGCATTGCAAGGTCGCCATCACGCCCCCAGCTGCGCCGCAGCAACAATTTGGCTTGCTCGCCGAAGAT
GCCGTGTACGAAGCACATCCATCGGGTTGCACGGAATGCACCAATGGGTATAGCGGCCGCGTGGGCATTTATGAAGTGAT
GGCGTTTCATCCCGCCTTGGCGGACGCGGTGATGCAGCGCGCCAGCATTCATCAAATCGAAACCATTGCCCAACAGCACG
GCATGCAACCCTTGCTGCAATCTGGGATTGAAAAACTGCGCGCAGGCATCACCAGTTTTAGTGAATTGCAGCGAGTACTC
TACTTTTAG
ATGCTTACCAACCTTATCGCCATTCTGCGTCAGGCTAAGTTGATCAGCCCAACGCAGGAACAGGCCGTAATGGATCATAT
TCACGCTTCCGGTGCCACGGTGCCGGAGGCGTTGATCGATTTGGCGATATTTCATCATCACGATTTAACCGAGCAACTAA
GTCAGATCTTTGGCCTACCCGAAACCGATCTCACTCGGTTTGATTACGCGCCATTGTGCCAGCAGTTGGGACTTCGAGAA
CTCATCACCCGCTACCAAGCCCTGCCGCTGCACAACAATGGCCAAATCCTGACGTTGGCGGTTGCTGACCCAACTCACCT
GCAAGTCGAAGACGAGTTTCGCTTTGCCACCGGATTACAGGTGGAACTGGTGCTCGCCGATCATAAAGCGCTGCACGCCG
CCATTCGCCGCTTGTATGGGCGCAGCCTCGCGACGCCGGGGACGCAAGGCAAAGAGATCAGTCAGGATGAATTGGCGGAT
CTGGTACAGATCTCTGACGACGAAAAAACCACCATTGAAGATCTCAGCCAAGATGATTCACCGGTCAGTCGTTTTATCAA
CCAGATCCTACTCGATGCCGTGCGCAAAGGTGCGTCCGACATTCACTTTGAGCCGTATGAGTCCCACTACCGTATTCGTC
TGCGCTGTGACGGCATTCTGGTCGAAACCCAACAACCTGCCAGTCACCTCAGCCGACGCTTGGCAGCCCGAATCAAAATT
TTGTCGAAACTGGATATTGCCGAGCGCCGCCTCCCGCAAGATGGACGCATCAAACTGCGCTTGGATGCCGACACCGCGAT
TGATATGCGTGTATCGACCTTGCCAACATTGTGGGGTGAAAAGATTGTTCTGCGCTTACTCGATAGCAGCGCGGCCAACC
TCAACATCGACAAACTCGGCTACAACGAACAGCAGAAACAGCTCTACCTCGCGGCCCTCACCAAACCGCAAGGCATGATC
TTAATGACCGGCCCAACCGGCAGCGGCAAAACCGTGTCGCTCTACACCGGATTACGCATTCTCAATACCGAACAAGTGAA
CATCTCCACCGCCGAAGATCCGGTGGAAATCAACCTGCCCGGTATCAATCAGGTGCAAGTTCAACCCAAAATCGGCTTTG
GCTTTGCACAAGCGCTGCGCTCGTTTCTACGCCAAGATCCCGATGTGGTGATGGTGGGCGAAATTCGCGATCTAGAAACC
GCAGAAATCGCCATTAAAGCCGCGCAAACTGGGCACTTAGTGCTCTCAACCTTGCACACCAACTCGGCCGCGGAAACCGT
GATTCGTTTAGCCAACATGGGCATTGAACCCTTTAACCTTGCCTCATCATTGAGCCTGATCATTGCGCAGCGGCTGGCCC
GCCGTTTGTGCCCGCATTGCAAGGTCGCCATCACGCCCCCAGCTGCGCCGCAGCAACAATTTGGCTTGCTCGCCGAAGAT
GCCGTGTACGAAGCACATCCATCGGGTTGCACGGAATGCACCAATGGGTATAGCGGCCGCGTGGGCATTTATGAAGTGAT
GGCGTTTCATCCCGCCTTGGCGGACGCGGTGATGCAGCGCGCCAGCATTCATCAAATCGAAACCATTGCCCAACAGCACG
GCATGCAACCCTTGCTGCAATCTGGGATTGAAAAACTGCGCGCAGGCATCACCAGTTTTAGTGAATTGCAGCGAGTACTC
TACTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio cholerae strain A1552 |
82.206 |
100 |
0.822 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
71.127 |
100 |
0.719 |
| pilB | Vibrio campbellii strain DS40M4 |
71.708 |
100 |
0.717 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.611 |
91.993 |
0.484 |
| pilB | Acinetobacter baumannii D1279779 |
51.06 |
92.349 |
0.472 |
| pilB | Acinetobacter baylyi ADP1 |
50.097 |
91.993 |
0.461 |
| pilF | Neisseria gonorrhoeae MS11 |
44.858 |
100 |
0.45 |
| pilB | Haemophilus influenzae 86-028NP |
39.658 |
93.772 |
0.372 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
37.636 |
97.865 |
0.368 |
| pilF | Thermus thermophilus HB27 |
36.655 |
100 |
0.367 |