Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY38_RS00630 Genome accession   NZ_CP046795
Coordinates   129461..130687 (-) Length   408 a.a.
NCBI ID   WP_004729085.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124461..135687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS00605 parC 124535..126808 (+) 2274 WP_004729093.1 DNA topoisomerase IV subunit A -
  GPY38_RS00610 yacG 126901..127098 (-) 198 WP_004729092.1 DNA gyrase inhibitor YacG -
  GPY38_RS00615 zapD 127156..127896 (-) 741 WP_004729090.1 cell division protein ZapD -
  GPY38_RS00620 coaE 127929..128537 (-) 609 WP_158140193.1 dephospho-CoA kinase -
  GPY38_RS00625 pilD 128540..129409 (-) 870 WP_014204458.1 A24 family peptidase Machinery gene
  GPY38_RS00630 pilC 129461..130687 (-) 1227 WP_004729085.1 type II secretion system F family protein Machinery gene
  GPY38_RS00635 pilB 130766..132454 (-) 1689 WP_158140195.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY38_RS00640 - 132461..132910 (-) 450 WP_158140197.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GPY38_RS00645 nadC 133158..134045 (-) 888 WP_154180385.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY38_RS00650 ampD 134196..134750 (+) 555 WP_158140199.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY38_RS00655 fldB 134786..135307 (-) 522 WP_004729075.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.05 Da        Isoelectric Point: 10.5674

>NTDB_id=407895 GPY38_RS00630 WP_004729085.1 129461..130687(-) (pilC) [Vibrio furnissii strain 2420-04]
MKPNKAAELKNFRWKGINSSGRKVAGHTLAISEIEVRDKLKEQHIQVKKIKKGSISLLTRLTHRVKTRDITLLTRQLSTM
LTTGVPIVQALKLVGDNHRKAEMKSILAQVTKGVEAGTPMSKAMRTASPHFDALYVDLIATGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPAMVMLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSLWGVLATSAGLLA
LKTARNKSLVFRLKTSRLGLRFPVVGAVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQEVHRHTAA
GMPMYIAMRNTDAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=407895 GPY38_RS00630 WP_004729085.1 129461..130687(-) (pilC) [Vibrio furnissii strain 2420-04]
ATGAAACCAAATAAAGCTGCCGAATTGAAAAACTTCCGCTGGAAAGGCATCAACAGCTCCGGGCGAAAAGTTGCCGGACA
CACCTTGGCCATCAGTGAAATCGAAGTGCGCGACAAGCTCAAAGAGCAGCACATTCAGGTGAAGAAGATCAAAAAAGGCA
GCATTTCACTGCTGACTCGCCTCACCCACCGCGTCAAGACTCGCGACATCACCCTGCTCACACGCCAGCTTTCCACCATG
CTGACTACAGGCGTGCCCATCGTTCAAGCGTTGAAACTGGTTGGCGACAATCACCGCAAAGCAGAAATGAAATCAATTCT
GGCCCAAGTCACCAAAGGGGTAGAAGCTGGCACCCCGATGTCCAAAGCGATGCGCACTGCCAGCCCACATTTTGATGCGC
TGTACGTTGACCTCATAGCCACCGGCGAGCAATCCGGGAATTTGGCTGAAGTGTTTGAGCGCCTTGCCACCTATCGAGAA
AAAAGCGAACAACTGCGCGCCAAAGTGATCAAGGCGCTGATCTATCCGGCAATGGTGATGTTGGTCGCGTTGGGCGTCTC
TTATCTGATGCTGACCATGGTCATTCCCGAGTTTGAAAGCATGTTCAAAGGCTTTGGCGCAGAGCTCCCTTGGTTTACCC
AGCAAATTCTAAAACTCTCCCACGGCGTGCAAGCCTATAGCCTATGGGGTGTACTGGCGACCAGCGCTGGCCTTTTGGCG
CTCAAAACCGCGCGCAACAAATCATTGGTCTTTCGATTGAAAACCAGCCGCCTTGGCTTGCGATTTCCTGTTGTCGGCGC
GGTATTAGCCAAGGCTGCCATCGCCAAATTCAGCCGCACATTGGCCACCAGTTTTAGCGCCGGTATACCAATTCTGGCCA
GTTTAAAAACTACCGCCAAAACTGCCGGCAACGTCCATTTTGAAACCGCGATTCAGGAGGTGCATCGCCATACCGCGGCA
GGCATGCCGATGTACATCGCCATGCGCAATACCGACGCATTTCCGGAGATGGTGCTGCAAATGGTGATGATTGGTGAAGA
GTCGGGCAAGCTTGACGACATGCTGAACAAAGTCGCGACCATTTATGAGTTTGAAGTCGACAATACCGTGGACAATCTGG
GGAAAATTCTCGAGCCACTGATCATCGTCTTTCTGGGAGTGGTCGTTGGCGGGCTGGTGGTTGCGATGTACCTCCCCATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.559

100

0.846
  pilC Vibrio campbellii strain DS40M4

73.697

98.775

0.728
  pilC Pseudomonas stutzeri DSM 10701

42.716

99.265

0.424
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Acinetobacter baylyi ADP1

40.441

100

0.404
  pilG Neisseria gonorrhoeae MS11

38.916

99.51

0.387
  pilG Neisseria meningitidis 44/76-A

38.67

99.51

0.385

Multiple sequence alignment