Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HZZ00_RS05115 Genome accession   NZ_CP058977
Coordinates   1135218..1135883 (+) Length   221 a.a.
NCBI ID   WP_070027104.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130218..1140883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS05085 (HZZ00_05085) - 1130327..1131118 (-) 792 WP_180331091.1 GntR family transcriptional regulator -
  HZZ00_RS05090 (HZZ00_05090) - 1131548..1132267 (+) 720 WP_374028543.1 tyrosine-type recombinase/integrase -
  HZZ00_RS05105 (HZZ00_05105) tig 1132832..1134202 (+) 1371 WP_180331093.1 trigger factor -
  HZZ00_RS05110 (HZZ00_05110) - 1134543..1135148 (+) 606 WP_180333392.1 ATP-dependent Clp protease proteolytic subunit -
  HZZ00_RS05115 (HZZ00_05115) clpP 1135218..1135883 (+) 666 WP_070027104.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HZZ00_RS05120 (HZZ00_05120) clpX 1136053..1137339 (+) 1287 WP_161297731.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HZZ00_RS05125 (HZZ00_05125) - 1137415..1138461 (-) 1047 WP_180331094.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24513.89 Da        Isoelectric Point: 4.6351

>NTDB_id=407867 HZZ00_RS05115 WP_070027104.1 1135218..1135883(+) (clpP) [Streptomyces sp. NEAU-sy36]
MSNFPGTASGMYEGPRPDARYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGDMTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNSRVLIHQPAGSTGRGQLSDLEIIA
NEFTRMREQLENMLAKHSNQPIEKIREDIERDKILTAEEALEYGLVDQIISTRKLNNSSVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=407867 HZZ00_RS05115 WP_070027104.1 1135218..1135883(+) (clpP) [Streptomyces sp. NEAU-sy36]
ATGAGCAACTTCCCCGGCACCGCCAGCGGCATGTACGAAGGGCCCCGGCCCGACGCCCGCTACGTCATCCCGCGCTTCGT
CGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTGGGCGTCC
AGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCG
ATCTACATCAACAGCCCCGGTGGCGACATGACCGCCCTGACGGCGATCTACGACACGATGCAGTTCGTGAAGCCCGACAT
CCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCATCCTGCTCGCGGCCGGCACCCCGGGCAAGCGCATGGCGC
TGCCCAACTCCCGGGTGCTGATCCACCAGCCGGCCGGCTCCACCGGCCGCGGCCAGCTCTCCGACCTGGAGATCATCGCC
AACGAGTTCACCCGGATGCGCGAGCAGCTGGAGAACATGCTGGCCAAGCACTCGAACCAGCCGATCGAGAAGATCCGCGA
GGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTGGAGTACGGCCTCGTCGACCAGATCATCTCCACCCGCA
AGCTGAACAACAGCTCGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

85.973

0.448
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

85.068

0.43
  clpP Streptococcus thermophilus LMG 18311

46.154

88.235

0.407
  clpP Streptococcus thermophilus LMD-9

46.154

88.235

0.407
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

88.688

0.398
  clpP Streptococcus pneumoniae Rx1

44.388

88.688

0.394
  clpP Streptococcus pneumoniae D39

44.388

88.688

0.394
  clpP Streptococcus pneumoniae R6

44.388

88.688

0.394
  clpP Streptococcus pneumoniae TIGR4

44.388

88.688

0.394
  clpP Streptococcus mutans UA159

44.615

88.235

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

88.688

0.389
  clpP Streptococcus pyogenes JRS4

43.59

88.235

0.385
  clpP Streptococcus pyogenes MGAS315

43.59

88.235

0.385

Multiple sequence alignment