Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GPX86_RS06340 Genome accession   NZ_CP046793
Coordinates   1428635..1429153 (-) Length   172 a.a.
NCBI ID   WP_004396114.1    Uniprot ID   A0AAW8GVB6
Organism   Vibrio metschnikovii strain 9502-00     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1423635..1434153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS06320 - 1424089..1424406 (-) 318 WP_233268194.1 MSHA biogenesis protein MshK -
  GPX86_RS06325 pilO 1424399..1425049 (-) 651 WP_158144327.1 type 4a pilus biogenesis protein PilO -
  GPX86_RS06330 - 1425049..1426491 (-) 1443 WP_199244811.1 MSHA biogenesis protein MshI -
  GPX86_RS06335 csrD 1426498..1428489 (-) 1992 WP_158144328.1 RNase E specificity factor CsrD -
  GPX86_RS06340 ssb 1428635..1429153 (-) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  GPX86_RS06345 qstR 1429436..1430086 (+) 651 WP_158144329.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX86_RS06350 galU 1430284..1431153 (+) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX86_RS06355 uvrA 1431298..1434123 (+) 2826 WP_158144330.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18967.94 Da        Isoelectric Point: 5.2358

>NTDB_id=407867 GPX86_RS06340 WP_004396114.1 1428635..1429153(-) (ssb) [Vibrio metschnikovii strain 9502-00]
MATRGVNKVILVGNLGADPEVRYMASGAAVANITLATSESWRDKTTGEQRERTEWHRVALYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGYNGIMQMLGGRQQGAAPGQGAPQGQQSNWGQPQQPSAQQSPKQSAPQQAQPQYN
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407867 GPX86_RS06340 WP_004396114.1 1428635..1429153(-) (ssb) [Vibrio metschnikovii strain 9502-00]
ATGGCAACCCGTGGCGTAAATAAAGTAATTTTGGTCGGTAACTTAGGGGCTGACCCTGAAGTTCGCTATATGGCAAGTGG
TGCTGCGGTAGCAAATATCACTCTGGCAACCTCAGAAAGCTGGCGTGATAAAACCACCGGCGAGCAACGTGAAAGAACGG
AATGGCACCGCGTAGCCTTATATGGCAAACTCGCTGAAGTTGCGGGCGAATATTTACGTAAGGGATCGCAGGTTTATATC
GAAGGTCAATTACAAACGCGTAAATGGCAAGATCAGAGCGGCCAAGATCGTTATACCACGGAAGTTGTGGTGCAAGGTTA
TAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAAGGTGCAGCGCCTGGACAGGGGGCTCCTCAAGGTCAACAAAGTA
ACTGGGGACAGCCACAACAACCTTCAGCGCAGCAATCACCGAAGCAGTCAGCACCTCAGCAAGCTCAGCCACAATATAAT
GAGCCGCCGATGGATTTTGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.921

100

0.843
  ssb Glaesserella parasuis strain SC1401

50.785

100

0.564
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.494
  ssb Neisseria meningitidis MC58

46.893

100

0.483

Multiple sequence alignment