Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPX86_RS06345 Genome accession   NZ_CP046793
Coordinates   1429436..1430086 (+) Length   216 a.a.
NCBI ID   WP_158144329.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424436..1435086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS06330 - 1425049..1426491 (-) 1443 WP_199244811.1 MSHA biogenesis protein MshI -
  GPX86_RS06335 csrD 1426498..1428489 (-) 1992 WP_158144328.1 RNase E specificity factor CsrD -
  GPX86_RS06340 ssb 1428635..1429153 (-) 519 WP_004396114.1 single-stranded DNA-binding protein Machinery gene
  GPX86_RS06345 qstR 1429436..1430086 (+) 651 WP_158144329.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX86_RS06350 galU 1430284..1431153 (+) 870 WP_154169290.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX86_RS06355 uvrA 1431298..1434123 (+) 2826 WP_158144330.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25268.06 Da        Isoelectric Point: 10.0663

>NTDB_id=407868 GPX86_RS06345 WP_158144329.1 1429436..1430086(+) (qstR) [Vibrio metschnikovii strain 9502-00]
MPKSSYARTIYYLTTDVNQSTPSRLQKAFHLLAIPIEKVEPEPLVQQYRHSKHKILLLDYQDHRAIRHRLGPLKLTTHYL
ETILFNVDKRLPTDLLISFGNLKGLFYQTDSAEQLSHGLAQIINGQNWLPRHVSNQLLHHFRYAFHEQHTKATLDLTVRE
IQILRCLQAQASNDDIAKNLFISELTVKSHLYQIYKKLAVKNRAQAISWANHHFFQ

Nucleotide


Download         Length: 651 bp        

>NTDB_id=407868 GPX86_RS06345 WP_158144329.1 1429436..1430086(+) (qstR) [Vibrio metschnikovii strain 9502-00]
ATGCCCAAATCGAGTTACGCGCGTACCATCTACTATCTGACCACAGACGTAAATCAATCGACTCCGAGTCGGTTACAAAA
AGCATTTCATCTACTCGCGATCCCTATCGAAAAAGTGGAGCCTGAACCGTTAGTACAACAATACCGACACAGTAAACACA
AGATACTGCTGCTCGATTATCAAGATCATCGCGCGATTCGTCATCGACTTGGTCCTTTAAAACTGACCACTCATTATCTT
GAGACGATTCTTTTTAATGTCGATAAACGACTACCGACCGATCTATTAATCAGCTTTGGGAATTTAAAGGGACTCTTTTA
TCAAACCGATAGTGCGGAGCAACTTTCCCATGGCTTGGCGCAGATCATTAATGGCCAAAATTGGTTGCCTCGTCATGTTT
CGAACCAATTACTGCATCATTTTCGTTACGCCTTTCATGAGCAACATACCAAAGCCACTCTCGATCTTACGGTTCGAGAA
ATACAGATTTTACGCTGTTTGCAAGCGCAAGCTTCCAACGATGATATTGCGAAGAACTTATTTATCAGCGAACTAACCGT
AAAGTCTCATTTGTACCAAATTTATAAAAAACTCGCGGTAAAAAACCGCGCACAAGCGATATCTTGGGCCAATCACCATT
TTTTTCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

60.465

99.537

0.602
  qstR Vibrio parahaemolyticus RIMD 2210633

46.047

99.537

0.458
  qstR Vibrio campbellii strain DS40M4

45.581

99.537

0.454

Multiple sequence alignment