Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY29_RS15450 | Genome accession | NZ_CP046787 |
| Coordinates | 3098068..3098472 (+) | Length | 134 a.a. |
| NCBI ID | WP_015297250.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 2013V-1174 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3093068..3103472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY29_RS15435 | pdhR | 3095100..3095867 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY29_RS15440 | ampD | 3096273..3096824 (-) | 552 | WP_025570907.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY29_RS15445 | nadC | 3096917..3097804 (+) | 888 | WP_029839214.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY29_RS15450 | pilA | 3098068..3098472 (+) | 405 | WP_015297250.1 | pilin | Machinery gene |
| GPY29_RS15455 | pilB | 3098472..3100157 (+) | 1686 | WP_029839215.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY29_RS15460 | pilC | 3100181..3101404 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| GPY29_RS15465 | pilD | 3101469..3102338 (+) | 870 | WP_029839217.1 | A24 family peptidase | Machinery gene |
| GPY29_RS15470 | coaE | 3102339..3102953 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13659.55 Da Isoelectric Point: 6.4433
>NTDB_id=407783 GPY29_RS15450 WP_015297250.1 3098068..3098472(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1174]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=407783 GPY29_RS15450 WP_015297250.1 3098068..3098472(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1174]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTGGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTGGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.143 |
100 |
0.545 |
| pilA | Pseudomonas aeruginosa PAK |
42.446 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae C6706 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.029 |
100 |
0.433 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.188 |
95.522 |
0.403 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.535 |
96.269 |
0.381 |