Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HZ988_RS04130 Genome accession   NZ_CP058948
Coordinates   877573..878178 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SY3626C5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872573..883178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ988_RS04100 (HZ988_04100) rsmS 873278..873439 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  HZ988_RS04105 (HZ988_04105) priC 873453..873980 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  HZ988_RS04110 (HZ988_04110) ybaN 874050..874427 (+) 378 WP_001188905.1 DUF454 family protein -
  HZ988_RS04115 (HZ988_04115) apt 874580..875131 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HZ988_RS04120 (HZ988_04120) dnaX 875260..877191 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HZ988_RS04125 (HZ988_04125) ybaB 877244..877573 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HZ988_RS04130 (HZ988_04130) recR 877573..878178 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HZ988_RS04135 (HZ988_04135) htpG 878288..880162 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HZ988_RS04140 (HZ988_04140) adk 880343..880987 (+) 645 WP_001220233.1 adenylate kinase -
  HZ988_RS04145 (HZ988_04145) hemH 881223..882185 (+) 963 WP_001250103.1 ferrochelatase -
  HZ988_RS04150 (HZ988_04150) aes 882182..883141 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=407786 HZ988_RS04130 WP_001195025.1 877573..878178(+) (recR) [Escherichia coli strain SY3626C5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=407786 HZ988_RS04130 WP_001195025.1 877573..878178(+) (recR) [Escherichia coli strain SY3626C5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCTCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment