Detailed information NTG0407786

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY29_RS15465
• Genome accession: NZ_CP046787
• Coordinates: 3101469..3102338 (+)
• Length: 289 a.a.
• NCBI ID: WP_029839217.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2013V-1174
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3096469..3107338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY29_RS15445	nadC	3096917..3097804 (+)	888	WP_029839214.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY29_RS15450	pilA	3098068..3098472 (+)	405	WP_015297250.1	pilin	Machinery gene
GPY29_RS15455	pilB	3098472..3100157 (+)	1686	WP_029839215.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY29_RS15460	pilC	3100181..3101404 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GPY29_RS15465	pilD	3101469..3102338 (+)	870	WP_029839217.1	A24 family peptidase	Machinery gene
GPY29_RS15470	coaE	3102339..3102953 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
GPY29_RS15475	zapD	3102981..3103721 (+)	741	WP_029839219.1	cell division protein ZapD	-
GPY29_RS15480	yacG	3103790..3103984 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY29_RS15485	rplS	3104343..3104696 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY29_RS15490	trmD	3104738..3105481 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY29_RS15495	rimM	3105509..3106057 (-)	549	WP_029829788.1	ribosome maturation factor RimM	-
GPY29_RS15500	rpsP	3106086..3106334 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32372.45 Da
• Isoelectric Point: 7.1970

>NTDB_id=407786 GPY29_RS15465 WP_029839217.1 3101469..3102338(+) (pilD) [Vibrio parahaemolyticus strain 2013V-1174]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLQAALGAWLGWQSLPMIILLSSIVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407786 GPY29_RS15465 WP_029839217.1 3101469..3102338(+) (pilD) [Vibrio parahaemolyticus strain 2013V-1174]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGGAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCAGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCATCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCGATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.581	100	0.886
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446