Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GPY46_RS22185 | Genome accession | NZ_CP046776 |
| Coordinates | 2720244..2720684 (+) | Length | 146 a.a. |
| NCBI ID | WP_025505038.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain AM43962 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2715244..2725684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY46_RS22170 | pdhR | 2717277..2718044 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| GPY46_RS22175 | ampD | 2718450..2719001 (-) | 552 | WP_025505040.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY46_RS22180 | nadC | 2719094..2719981 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY46_RS22185 | pilA | 2720244..2720684 (+) | 441 | WP_025505038.1 | pilin | Machinery gene |
| GPY46_RS22190 | pilB | 2720693..2722378 (+) | 1686 | WP_158128014.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY46_RS22195 | pilC | 2722403..2723626 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| GPY46_RS22200 | pilD | 2723691..2724560 (+) | 870 | WP_053315319.1 | A24 family peptidase | Machinery gene |
| GPY46_RS22205 | coaE | 2724561..2725175 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 14991.18 Da Isoelectric Point: 9.9591
>NTDB_id=407515 GPY46_RS22185 WP_025505038.1 2720244..2720684(+) (pilA) [Vibrio parahaemolyticus strain AM43962]
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFNSTGVSPDVISKDVTLGRDGTGQWSCTSGITATGVKPKACSK
MKHSKQKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAASALASITGHRINVETYVVENGSFPTTAQLPVPTSP
LGVVSYTASASGAGASSGAIKFTFNSTGVSPDVISKDVTLGRDGTGQWSCTSGITATGVKPKACSK
Nucleotide
Download Length: 441 bp
>NTDB_id=407515 GPY46_RS22185 WP_025505038.1 2720244..2720684(+) (pilA) [Vibrio parahaemolyticus strain AM43962]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCAGGTGCATCGTCAGGTGCAATAAAATTCACATTTAATAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGGGCGTGATGGAACAGGTCAATGGAGCTGTACCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGCTCTAAATAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
AGCTGCAATTGCAGTTCCACAATACCAAAAATATGTAGCTAAAAGTGAGGCAGCGTCTGCACTAGCCTCCATCACTGGGC
ATAGAATAAATGTTGAGACTTATGTTGTTGAAAATGGCTCATTTCCAACAACGGCCCAGCTGCCAGTTCCGACTTCTCCA
CTTGGTGTAGTTAGCTATACAGCTTCAGCTTCAGGAGCAGGTGCATCGTCAGGTGCAATAAAATTCACATTTAATAGCAC
AGGTGTAAGTCCAGACGTTATAAGTAAGGACGTGACTCTAGGGCGTGATGGAACAGGTCAATGGAGCTGTACCTCTGGTA
TTACTGCTACAGGTGTAAAACCTAAAGCATGCTCTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.711 |
100 |
0.486 |
| pilA | Vibrio cholerae strain A1552 |
46.711 |
100 |
0.486 |
| pilA | Vibrio cholerae C6706 |
46.711 |
100 |
0.486 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.624 |
100 |
0.445 |
| pilA | Pseudomonas aeruginosa PAK |
41.83 |
100 |
0.438 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.781 |
100 |
0.418 |
| pilA | Acinetobacter baumannii strain A118 |
42.336 |
93.836 |
0.397 |