Detailed information NTG0407518

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GPY46_RS22200
• Genome accession: NZ_CP046776
• Coordinates: 2723691..2724560 (+)
• Length: 289 a.a.
• NCBI ID: WP_053315319.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AM43962
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2718691..2729560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY46_RS22180	nadC	2719094..2719981 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GPY46_RS22185	pilA	2720244..2720684 (+)	441	WP_025505038.1	pilin	Machinery gene
GPY46_RS22190	pilB	2720693..2722378 (+)	1686	WP_158128014.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GPY46_RS22195	pilC	2722403..2723626 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
GPY46_RS22200	pilD	2723691..2724560 (+)	870	WP_053315319.1	A24 family peptidase	Machinery gene
GPY46_RS22205	coaE	2724561..2725175 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
GPY46_RS22210	zapD	2725203..2725943 (+)	741	WP_023624252.1	cell division protein ZapD	-
GPY46_RS22215	yacG	2726012..2726206 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
GPY46_RS22220	rplS	2726580..2726933 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
GPY46_RS22225	trmD	2726975..2727718 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
GPY46_RS22230	rimM	2727746..2728294 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
GPY46_RS22235	rpsP	2728323..2728571 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32343.46 Da
• Isoelectric Point: 7.1970

>NTDB_id=407518 GPY46_RS22200 WP_053315319.1 2723691..2724560(+) (pilD) [Vibrio parahaemolyticus strain AM43962]
MEVFQYYPWLFVVFASILGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=407518 GPY46_RS22200 WP_053315319.1 2723691..2724560(+) (pilD) [Vibrio parahaemolyticus strain AM43962]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTAGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45