Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPY46_RS09110 Genome accession   NZ_CP046776
Coordinates   75992..77104 (+) Length   370 a.a.
NCBI ID   WP_029804724.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM43962     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 70992..82104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS09090 rsmB 71912..73195 (-) 1284 WP_031411279.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GPY46_RS09095 fmt 73276..74223 (-) 948 WP_024699622.1 methionyl-tRNA formyltransferase -
  GPY46_RS09100 def 74257..74775 (-) 519 WP_005461416.1 peptide deformylase -
  GPY46_RS09105 - 74914..76008 (+) 1095 WP_025499539.1 LysM peptidoglycan-binding domain-containing protein -
  GPY46_RS09110 dprA 75992..77104 (+) 1113 WP_029804724.1 DNA-processing protein DprA Machinery gene
  GPY46_RS09115 - 77107..77586 (+) 480 WP_005461440.1 DUF494 family protein -
  GPY46_RS09120 - 77665..78234 (+) 570 WP_025442383.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  GPY46_RS09125 - 78304..79431 (-) 1128 WP_062855552.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPY46_RS09130 purE 79436..79921 (-) 486 WP_005497410.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPY46_RS09135 - 80121..80678 (+) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  GPY46_RS09140 hemF 80726..81643 (+) 918 WP_020904437.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39948.62 Da        Isoelectric Point: 6.6607

>NTDB_id=407497 GPY46_RS09110 WP_029804724.1 75992..77104(+) (dprA) [Vibrio parahaemolyticus strain AM43962]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLARRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=407497 GPY46_RS09110 WP_029804724.1 75992..77104(+) (dprA) [Vibrio parahaemolyticus strain AM43962]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGTTTAGCGCGGCGAGTAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.875

100

0.411
  dprA Neisseria meningitidis MC58

38.875

100

0.411
  dprA Neisseria gonorrhoeae MS11

36.761

100

0.386
  dprA Neisseria gonorrhoeae strain FA1090

36.504

100

0.384

Multiple sequence alignment