Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPY59_RS08740 Genome accession   NZ_CP046772
Coordinates   109929..111038 (-) Length   369 a.a.
NCBI ID   WP_158173534.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 104929..116038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS08710 hemF 105390..106307 (-) 918 WP_158173533.1 oxygen-dependent coproporphyrinogen oxidase -
  GPY59_RS08715 - 106355..106912 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  GPY59_RS08720 purE 107112..107597 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPY59_RS08725 - 107602..108735 (+) 1134 WP_064354422.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPY59_RS08730 - 108801..109370 (-) 570 WP_047102572.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  GPY59_RS08735 - 109447..109926 (-) 480 WP_005379074.1 DUF494 family protein -
  GPY59_RS08740 dprA 109929..111038 (-) 1110 WP_158173534.1 DNA-processing protein DprA Machinery gene
  GPY59_RS08745 - 111022..112116 (-) 1095 WP_053304038.1 LysM peptidoglycan-binding domain-containing protein -
  GPY59_RS08750 def 112255..112773 (+) 519 WP_064354423.1 peptide deformylase -
  GPY59_RS08755 fmt 112807..113754 (+) 948 WP_064354424.1 methionyl-tRNA formyltransferase -
  GPY59_RS08760 rsmB 113837..115120 (+) 1284 WP_158173536.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40057.78 Da        Isoelectric Point: 6.9578

>NTDB_id=407448 GPY59_RS08740 WP_158173534.1 109929..111038(-) (dprA) [Vibrio alginolyticus strain 2014V-1011]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQVAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEYGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=407448 GPY59_RS08740 WP_158173534.1 109929..111038(-) (dprA) [Vibrio alginolyticus strain 2014V-1011]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAGTCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAATATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACTGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.297

100

0.575
  dprA Glaesserella parasuis strain SC1401

46.237

100

0.466
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379

Multiple sequence alignment