Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPY31_RS23475 Genome accession   NZ_CP046760
Coordinates   3055563..3056675 (-) Length   370 a.a.
NCBI ID   WP_020839887.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain AM51552     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3050563..3061675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY31_RS23445 hemF 3051024..3051941 (-) 918 WP_083110913.1 oxygen-dependent coproporphyrinogen oxidase -
  GPY31_RS23450 - 3051989..3052546 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  GPY31_RS23455 purE 3052746..3053231 (+) 486 WP_005497410.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GPY31_RS23460 - 3053236..3054369 (+) 1134 WP_024703798.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GPY31_RS23465 - 3054433..3055002 (-) 570 WP_005386647.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  GPY31_RS23470 - 3055081..3055560 (-) 480 WP_005461440.1 DUF494 family protein -
  GPY31_RS23475 dprA 3055563..3056675 (-) 1113 WP_020839887.1 DNA-processing protein DprA Machinery gene
  GPY31_RS23480 - 3056659..3057753 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  GPY31_RS23485 def 3057892..3058410 (+) 519 WP_005461416.1 peptide deformylase -
  GPY31_RS23490 fmt 3058444..3059391 (+) 948 WP_025606610.1 methionyl-tRNA formyltransferase -
  GPY31_RS23495 rsmB 3059472..3060755 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39883.49 Da        Isoelectric Point: 6.4133

>NTDB_id=407299 GPY31_RS23475 WP_020839887.1 3055563..3056675(-) (dprA) [Vibrio parahaemolyticus strain AM51552]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=407299 GPY31_RS23475 WP_020839887.1 3055563..3056675(-) (dprA) [Vibrio parahaemolyticus strain AM51552]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTTTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAGAATGGAGCTCTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

85.135

100

0.851
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment