Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY20_RS12690 Genome accession   NZ_CP046756
Coordinates   1201655..1202881 (-) Length   408 a.a.
NCBI ID   WP_158129990.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196655..1207881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS12665 parC 1196774..1199047 (+) 2274 WP_158129987.1 DNA topoisomerase IV subunit A -
  GPY20_RS12670 yacG 1199098..1199295 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  GPY20_RS12675 zapD 1199350..1200090 (-) 741 WP_158129988.1 cell division protein ZapD -
  GPY20_RS12680 coaE 1200123..1200731 (-) 609 WP_158129989.1 dephospho-CoA kinase -
  GPY20_RS12685 pilD 1200734..1201603 (-) 870 WP_024374403.1 A24 family peptidase Machinery gene
  GPY20_RS12690 pilC 1201655..1202881 (-) 1227 WP_158129990.1 type II secretion system F family protein Machinery gene
  GPY20_RS12695 pilB 1202917..1204605 (-) 1689 WP_158129991.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY20_RS12700 - 1204619..1205035 (-) 417 WP_158129992.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GPY20_RS12705 nadC 1205267..1206154 (-) 888 WP_158129993.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY20_RS12710 ampD 1206307..1206858 (+) 552 WP_158129994.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY20_RS12715 fldB 1206863..1207384 (-) 522 WP_020430452.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44714.97 Da        Isoelectric Point: 10.5318

>NTDB_id=407244 GPY20_RS12690 WP_158129990.1 1201655..1202881(-) (pilC) [Vibrio fluvialis strain 2015AW-0077]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNRVKTKEITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLSLVFG
IKAARKKSFVVRLKTSQLSLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=407244 GPY20_RS12690 WP_158129990.1 1201655..1202881(-) (pilC) [Vibrio fluvialis strain 2015AW-0077]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAAAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCGGTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGAAATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCGATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGCACTGCCAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGTGAGCAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTATCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGAGCTTGGTGTTTGGC
ATCAAAGCGGCGCGGAAAAAATCCTTCGTGGTCCGTCTTAAAACCAGCCAGCTCAGCCTGCGTTTTCCCATCATTGGGGG
TGTGCTTGCCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCAGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

86.765

100

0.868
  pilC Vibrio campbellii strain DS40M4

72.346

99.265

0.718
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Acinetobacter baylyi ADP1

41.058

97.304

0.4
  pilC Legionella pneumophila strain ERS1305867

40.852

97.794

0.4
  pilG Neisseria gonorrhoeae MS11

39.348

97.794

0.385
  pilC Pseudomonas stutzeri DSM 10701

39.646

97.059

0.385
  pilG Neisseria meningitidis 44/76-A

38.847

97.794

0.38

Multiple sequence alignment