Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | GPY00_RS08700 | Genome accession | NZ_CP046747 |
| Coordinates | 1852431..1854119 (-) | Length | 562 a.a. |
| NCBI ID | WP_019829615.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 3541-04 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1847431..1859119
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY00_RS08675 | yacG | 1848487..1848684 (-) | 198 | WP_000162865.1 | DNA gyrase inhibitor YacG | - |
| GPY00_RS08680 | zapD | 1848842..1849582 (-) | 741 | WP_019829618.1 | cell division protein ZapD | - |
| GPY00_RS08685 | coaE | 1849614..1850222 (-) | 609 | WP_000011550.1 | dephospho-CoA kinase | - |
| GPY00_RS08690 | pilD | 1850219..1851094 (-) | 876 | WP_019829617.1 | A24 family peptidase | Machinery gene |
| GPY00_RS08695 | pilC | 1851152..1852378 (-) | 1227 | WP_019829616.1 | type II secretion system F family protein | Machinery gene |
| GPY00_RS08700 | pilB | 1852431..1854119 (-) | 1689 | WP_019829615.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GPY00_RS08705 | - | 1854126..1854536 (-) | 411 | WP_019829614.1 | pilin | - |
| GPY00_RS08710 | nadC | 1854782..1855672 (-) | 891 | WP_000665274.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GPY00_RS08715 | ampD | 1855970..1856515 (+) | 546 | WP_019829613.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GPY00_RS08720 | - | 1856585..1857965 (-) | 1381 | Protein_1614 | IS4 family transposase | - |
| GPY00_RS08725 | fldB | 1858104..1858622 (-) | 519 | WP_019828645.1 | flavodoxin FldB | - |
Sequence
Protein
Download Length: 562 a.a. Molecular weight: 62004.09 Da Isoelectric Point: 6.0856
>NTDB_id=407067 GPY00_RS08700 WP_019829615.1 1852431..1854119(-) (pilB) [Vibrio cholerae strain 3541-04]
MLTNLVAILRQAELISATQEQAVVTQVSASGTSVPEALLGLGVFHAQELTEQLSHIFGLPETDLSRYDYAPLCQQLGLRE
LITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSIQGAANQGKEISQDELAT
LVKVSDDELQSIEDLSQDDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKI
LSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMI
LMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLET
AEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNE
ILYEANAAGCNECTGGYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRVL
YF
MLTNLVAILRQAELISATQEQAVVTQVSASGTSVPEALLGLGVFHAQELTEQLSHIFGLPETDLSRYDYAPLCQQLGLRE
LITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSIQGAANQGKEISQDELAT
LVKVSDDELQSIEDLSQDDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKI
LSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMI
LMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLET
AEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNE
ILYEANAAGCNECTGGYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRVL
YF
Nucleotide
Download Length: 1689 bp
>NTDB_id=407067 GPY00_RS08700 WP_019829615.1 1852431..1854119(-) (pilB) [Vibrio cholerae strain 3541-04]
ATGCTGACCAACCTTGTTGCTATCTTGCGTCAGGCTGAGTTAATCAGCGCAACGCAAGAACAAGCGGTGGTTACACAGGT
TAGCGCTTCGGGGACGTCGGTGCCCGAGGCGCTGCTTGGTTTAGGCGTTTTTCACGCCCAAGAGCTGACCGAGCAACTGA
GCCATATTTTCGGCTTGCCGGAAACCGACCTTAGCCGCTACGACTACGCGCCCCTGTGCCAACAGCTTGGGCTGCGTGAA
CTGATTACCCGCTACGATGCCTTGCCGATTGCCAAGCAAGGCAATTTATTGCTGCTCGCCGTCTCTGACCCCACCTTACT
GCAAGCCGAAGAAGAGTTTCGCTTTGCCACTGGGCTACAAGTTGAACTGGCACTGGCCGATCACCGTGCGCTGCAAGCGG
CGATTCGCCGTTTGTATGGCCGATCGATTCAAGGCGCAGCCAACCAAGGGAAAGAGATCAGCCAAGATGAGCTCGCCACA
CTGGTTAAAGTCAGTGATGACGAGCTGCAATCGATCGAAGATCTCAGCCAAGATGACTCTCCGGTTAGCCGCTTTATCAA
CCAAGTGCTGCTCGATGCGGTGCGCAAAGGCGCCTCCGATATTCATTTTGAGCCGTATGAAAACCAGTATCGGATCCGCC
TGCGCTGCGATGGGATCTTGGTTGAAACTCAGCAACCGGCTAGCCATTTAAGTCGCCGTTTAGCCGCGCGGATTAAAATT
CTCTCCAAATTAGATATTGCCGAGCGCCGCTTGCCGCAAGACGGCCGGATTAAACTGCGCCTAAGCCGCGATACCGCGAT
TGATATGCGTGTATCCACGCTTCCCACTTTATGGGGCGAAAAAATCGTGCTGCGTCTGCTCGATAGCAGCGCCGCCAATC
TGGATATTGATAAGCTCGGCTATAACCCGCAGCAAAAGCAGCTCTACCTCAACGCCCTCAAAAGACCGCAAGGGATGATT
TTGATGACAGGCCCCACCGGCAGCGGCAAAACCGTTTCGCTCTATACTGGGCTGCGCATTCTTAACACGTCACAGATCAA
TATCTCCACCGCGGAAGATCCGGTGGAAATTAACCTCTCTGGGATTAACCAAGTGCAAGTGCAGCCGAAAATCGGCTTTG
GCTTTGCCGAAGCGCTACGCTCGTTTCTACGCCAAGATCCGGATGTGGTGATGGTCGGCGAAATACGCGATCTGGAAACC
GCAGAAATCGCGGTAAAAGCCGCGCAAACCGGCCACTTGGTGCTTTCCACCCTGCACACAAACTCGGCCGCCGAAACCGT
GATTCGCTTAGCCAATATGGGGGTGGAGCCGTTTAACCTAGCGTCCTCACTCAGTTTAATCATCGCCCAACGCCTTGCTC
GCCGCCTATGTAAACACTGCAAAATCGCGGTGCGCCCTTCTGCCCTATTGCAAAGCCAATTTGCGTTTCAGCCCAATGAA
ATCTTATATGAAGCCAATGCGGCGGGGTGTAACGAGTGCACGGGCGGCTATTCAGGGCGCGTTGGGATCTATGAAGTGAT
GGCGTTTAATACCGAGCTGGCGGAGGCCATTATGCAACGCGCCAGCATTCATCAAATTGAACGTTTAGCCAAAGCGAATG
GCATGCAAACGTTGCAAGAGTCCGGCCTTGAAAAGCTGCGCGAAGGCATCACCAGTTTTGCCGAACTGCAACGCGTGCTT
TATTTTTAA
ATGCTGACCAACCTTGTTGCTATCTTGCGTCAGGCTGAGTTAATCAGCGCAACGCAAGAACAAGCGGTGGTTACACAGGT
TAGCGCTTCGGGGACGTCGGTGCCCGAGGCGCTGCTTGGTTTAGGCGTTTTTCACGCCCAAGAGCTGACCGAGCAACTGA
GCCATATTTTCGGCTTGCCGGAAACCGACCTTAGCCGCTACGACTACGCGCCCCTGTGCCAACAGCTTGGGCTGCGTGAA
CTGATTACCCGCTACGATGCCTTGCCGATTGCCAAGCAAGGCAATTTATTGCTGCTCGCCGTCTCTGACCCCACCTTACT
GCAAGCCGAAGAAGAGTTTCGCTTTGCCACTGGGCTACAAGTTGAACTGGCACTGGCCGATCACCGTGCGCTGCAAGCGG
CGATTCGCCGTTTGTATGGCCGATCGATTCAAGGCGCAGCCAACCAAGGGAAAGAGATCAGCCAAGATGAGCTCGCCACA
CTGGTTAAAGTCAGTGATGACGAGCTGCAATCGATCGAAGATCTCAGCCAAGATGACTCTCCGGTTAGCCGCTTTATCAA
CCAAGTGCTGCTCGATGCGGTGCGCAAAGGCGCCTCCGATATTCATTTTGAGCCGTATGAAAACCAGTATCGGATCCGCC
TGCGCTGCGATGGGATCTTGGTTGAAACTCAGCAACCGGCTAGCCATTTAAGTCGCCGTTTAGCCGCGCGGATTAAAATT
CTCTCCAAATTAGATATTGCCGAGCGCCGCTTGCCGCAAGACGGCCGGATTAAACTGCGCCTAAGCCGCGATACCGCGAT
TGATATGCGTGTATCCACGCTTCCCACTTTATGGGGCGAAAAAATCGTGCTGCGTCTGCTCGATAGCAGCGCCGCCAATC
TGGATATTGATAAGCTCGGCTATAACCCGCAGCAAAAGCAGCTCTACCTCAACGCCCTCAAAAGACCGCAAGGGATGATT
TTGATGACAGGCCCCACCGGCAGCGGCAAAACCGTTTCGCTCTATACTGGGCTGCGCATTCTTAACACGTCACAGATCAA
TATCTCCACCGCGGAAGATCCGGTGGAAATTAACCTCTCTGGGATTAACCAAGTGCAAGTGCAGCCGAAAATCGGCTTTG
GCTTTGCCGAAGCGCTACGCTCGTTTCTACGCCAAGATCCGGATGTGGTGATGGTCGGCGAAATACGCGATCTGGAAACC
GCAGAAATCGCGGTAAAAGCCGCGCAAACCGGCCACTTGGTGCTTTCCACCCTGCACACAAACTCGGCCGCCGAAACCGT
GATTCGCTTAGCCAATATGGGGGTGGAGCCGTTTAACCTAGCGTCCTCACTCAGTTTAATCATCGCCCAACGCCTTGCTC
GCCGCCTATGTAAACACTGCAAAATCGCGGTGCGCCCTTCTGCCCTATTGCAAAGCCAATTTGCGTTTCAGCCCAATGAA
ATCTTATATGAAGCCAATGCGGCGGGGTGTAACGAGTGCACGGGCGGCTATTCAGGGCGCGTTGGGATCTATGAAGTGAT
GGCGTTTAATACCGAGCTGGCGGAGGCCATTATGCAACGCGCCAGCATTCATCAAATTGAACGTTTAGCCAAAGCGAATG
GCATGCAAACGTTGCAAGAGTCCGGCCTTGAAAAGCTGCGCGAAGGCATCACCAGTTTTGCCGAACTGCAACGCGTGCTT
TATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio cholerae strain A1552 |
99.11 |
100 |
0.991 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
73.843 |
100 |
0.738 |
| pilB | Vibrio campbellii strain DS40M4 |
73.665 |
100 |
0.737 |
| pilB | Legionella pneumophila strain ERS1305867 |
51.619 |
93.416 |
0.482 |
| pilB | Acinetobacter baylyi ADP1 |
50.484 |
91.993 |
0.464 |
| pilB | Acinetobacter baumannii D1279779 |
50.096 |
92.349 |
0.463 |
| pilF | Neisseria gonorrhoeae MS11 |
45.907 |
100 |
0.459 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
37.417 |
100 |
0.402 |
| pilF | Thermus thermophilus HB27 |
40.665 |
96.263 |
0.391 |
| pilB | Haemophilus influenzae 86-028NP |
39.469 |
93.772 |
0.37 |