Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SSU16085_RS09890 Genome accession   NZ_CP058740
Coordinates   2038345..2038794 (-) Length   149 a.a.
NCBI ID   WP_024387360.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033345..2043794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS09870 (SSU16085_02011) - 2033540..2033959 (+) 420 WP_024394561.1 hypothetical protein -
  SSU16085_RS09875 (SSU16085_02012) - 2034018..2034329 (+) 312 WP_153055172.1 DUF1492 domain-containing protein -
  SSU16085_RS09880 (SSU16085_02013) - 2034861..2036645 (-) 1785 WP_024394879.1 ABC transporter ATP-binding protein -
  SSU16085_RS09885 (SSU16085_02014) - 2036646..2038352 (-) 1707 WP_024394878.1 ABC transporter ATP-binding protein -
  SSU16085_RS09890 (SSU16085_02015) rcrR 2038345..2038794 (-) 450 WP_024387360.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SSU16085_RS09895 (SSU16085_02016) - 2039016..2040032 (+) 1017 WP_012027922.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SSU16085_RS09900 (SSU16085_02017) galU 2040077..2040976 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SSU16085_RS09905 (SSU16085_02018) - 2040994..2041671 (-) 678 WP_043033090.1 rhomboid family intramembrane serine protease -
  SSU16085_RS09910 (SSU16085_02019) - 2041655..2042197 (-) 543 WP_024387358.1 5-formyltetrahydrofolate cyclo-ligase -
  SSU16085_RS09915 (SSU16085_02020) - 2042238..2043365 (-) 1128 WP_192062987.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17580.11 Da        Isoelectric Point: 8.1233

>NTDB_id=407066 SSU16085_RS09890 WP_024387360.1 2038345..2038794(-) (rcrR) [Streptococcus suis strain 16085/3b]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVANQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=407066 SSU16085_RS09890 WP_024387360.1 2038345..2038794(-) (rcrR) [Streptococcus suis strain 16085/3b]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGTTTCATAGCGGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGCTA
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416

Multiple sequence alignment