Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GPK32_RS10990 Genome accession   NZ_CP046669
Coordinates   1963216..1964478 (-) Length   420 a.a.
NCBI ID   WP_157262570.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain 83-18     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958216..1969478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPK32_RS10975 (GPK32_10975) - 1959261..1960067 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  GPK32_RS10980 (GPK32_10980) rny 1960192..1961751 (-) 1560 WP_003644638.1 ribonuclease Y -
  GPK32_RS10985 (GPK32_10985) recA 1961982..1963124 (-) 1143 WP_070085303.1 recombinase RecA Machinery gene
  GPK32_RS10990 (GPK32_10990) cinA 1963216..1964478 (-) 1263 WP_157262570.1 competence/damage-inducible protein A Machinery gene
  GPK32_RS10995 (GPK32_10995) pgsA 1964750..1965334 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPK32_RS11000 (GPK32_11000) - 1965357..1966229 (-) 873 WP_003641501.1 RodZ domain-containing protein -
  GPK32_RS11005 (GPK32_11005) yfmH 1966333..1967634 (-) 1302 WP_157262572.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GPK32_RS11010 (GPK32_11010) yfmF 1967631..1968911 (-) 1281 WP_262352342.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45172.29 Da        Isoelectric Point: 5.4407

>NTDB_id=406557 GPK32_RS10990 WP_157262570.1 1963216..1964478(-) (cinA) [Lactiplantibacillus plantarum strain 83-18]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLPTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLQPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=406557 GPK32_RS10990 WP_157262570.1 1963216..1964478(-) (cinA) [Lactiplantibacillus plantarum strain 83-18]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAATAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGCCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCAACCCTTGATTGATGAACAGCAGGCGGTTACGATTGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTAAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(260-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.349

100

0.488
  cinA Streptococcus pneumoniae TIGR4

48.113

100

0.486
  cinA Streptococcus pneumoniae Rx1

48.113

100

0.486
  cinA Streptococcus pneumoniae R6

48.113

100

0.486
  cinA Streptococcus pneumoniae D39

47.877

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.476
  cinA Streptococcus mutans UA159

47.711

98.81

0.471
  cinA Bacillus subtilis subsp. subtilis str. 168

44.31

98.333

0.436
  cinA Streptococcus suis isolate S10

39.423

99.048

0.39

Multiple sequence alignment