Detailed information NTG0406295

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: GPA00_RS03655
• Genome accession: NZ_CP046629
• Coordinates: 708882..709319 (+)
• Length: 145 a.a.
• NCBI ID: WP_157327522.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain CNU G6
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 703882..714319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPA00_RS03625 (GPA00_03625)	-	705589..705957 (+)	369	WP_094140982.1	DUF1033 family protein	-
GPA00_RS03630 (GPA00_03630)	comYA	706026..706967 (+)	942	WP_027968018.1	competence type IV pilus ATPase ComGA	Machinery gene
GPA00_RS03635 (GPA00_03635)	comYB	706891..707934 (+)	1044	WP_167697815.1	competence type IV pilus assembly protein ComGB	Machinery gene
GPA00_RS03640 (GPA00_03640)	comYC	707934..708236 (+)	303	WP_021141433.1	competence type IV pilus major pilin ComGC	Machinery gene
GPA00_RS03645 (GPA00_03645)	comGD	708211..708651 (+)	441	WP_157327520.1	competence type IV pilus minor pilin ComGD	-
GPA00_RS03650 (GPA00_03650)	comYE	708605..708898 (+)	294	WP_074629067.1	competence type IV pilus minor pilin ComGE	Machinery gene
GPA00_RS03655 (GPA00_03655)	comYF	708882..709319 (+)	438	WP_157327522.1	competence type IV pilus minor pilin ComGF	Machinery gene
GPA00_RS03660 (GPA00_03660)	comGG	709348..709641 (+)	294	WP_268894141.1	competence type IV pilus minor pilin ComGG	-
GPA00_RS03665 (GPA00_03665)	comYH	709695..710651 (+)	957	WP_024344497.1	class I SAM-dependent methyltransferase	Machinery gene
GPA00_RS03670 (GPA00_03670)	-	710705..711904 (+)	1200	WP_045798327.1	acetate kinase	-
GPA00_RS03675 (GPA00_03675)	-	712062..712259 (+)	198	WP_027968026.1	helix-turn-helix transcriptional regulator	-
GPA00_RS03680 (GPA00_03680)	-	712315..712767 (+)	453	WP_074483978.1	ABC transporter permease	-
GPA00_RS03685 (GPA00_03685)	-	712779..713414 (+)	636	WP_141348477.1	CPBP family intramembrane glutamic endopeptidase	-
GPA00_RS03690 (GPA00_03690)	proC	713466..714236 (-)	771	WP_157327526.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16573.78 Da
• Isoelectric Point: 5.7485

>NTDB_id=406295 GPA00_RS03655 WP_157327522.1 708882..709319(+) (comYF) [Streptococcus equinus strain CNU G6]
MLRRTRLKAFTLLESLVTLLVISGTVLVYQGLTQSISQNVYYLSDNEENEWLLFSQQLRSELERCHLDCVSDNKLYVSKD
DKKLAYGLSKADDFRKTNASGQGYQPMLFGVNSSSIHQDGNNILIKLRMDNGMEREFVYTFDAAS

Nucleotide

• Length: 438 bp

>NTDB_id=406295 GPA00_RS03655 WP_157327522.1 708882..709319(+) (comYF) [Streptococcus equinus strain CNU G6]
ATGTTAAGAAGAACTAGACTAAAGGCGTTTACGTTACTTGAAAGTTTGGTTACTTTGCTGGTTATTTCAGGGACAGTTCT
GGTTTATCAAGGGCTAACGCAGTCAATTTCACAAAATGTTTATTACTTGTCTGATAACGAAGAAAATGAGTGGCTTTTAT
TTTCTCAGCAGCTGCGCTCAGAATTAGAGCGATGCCACTTAGATTGTGTTTCTGACAATAAACTTTATGTTAGTAAGGAT
GATAAGAAATTAGCTTATGGGCTATCAAAAGCAGATGATTTTCGTAAAACAAATGCTTCTGGTCAAGGTTATCAGCCAAT
GTTATTTGGTGTTAATTCTTCTAGCATTCATCAGGATGGTAATAATATTTTGATTAAGCTGCGAATGGATAATGGTATGG
AGAGAGAGTTTGTTTACACTTTTGATGCGGCAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	55.072	95.172	0.524
comYF	Streptococcus mutans UA159	54.348	95.172	0.517
comGF	Lactococcus lactis subsp. cremoris KW2	47.826	95.172	0.455
comGF/cglF	Streptococcus pneumoniae Rx1	46.715	94.483	0.441
comGF/cglF	Streptococcus pneumoniae D39	46.715	94.483	0.441
comGF/cglF	Streptococcus pneumoniae R6	46.715	94.483	0.441
comGF/cglF	Streptococcus pneumoniae TIGR4	46.715	94.483	0.441
comGF/cglF	Streptococcus mitis NCTC 12261	44.604	95.862	0.428
comGF/cglF	Streptococcus mitis SK321	43.885	95.862	0.421