Detailed information NTG0406296

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HZR83_RS21090
• Genome accession: NZ_CP058661
• Coordinates: 4399230..4400222 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 005008
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4394230..4405222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZR83_RS21065 (HZR83_21055)	ygbN	4394885..4396249 (+)	1365	WP_000104455.1	GntP family transporter	-
HZR83_RS21070 (HZR83_21060)	-	4396288..4396524 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HZR83_RS21075 (HZR83_21065)	-	4396535..4397962 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HZR83_RS21080 (HZR83_21070)	-	4397962..4398555 (-)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HZR83_RS21085 (HZR83_21075)	-	4398702..4399109 (+)	408	WP_001521151.1	MarR family transcriptional regulator	-
HZR83_RS21090 (HZR83_21080)	rpoS	4399230..4400222 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HZR83_RS21095 (HZR83_21085)	nlpD	4400285..4401379 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HZR83_RS21100 (HZR83_21090)	pcm	4401564..4402190 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HZR83_RS21105 (HZR83_21095)	surE	4402184..4402945 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HZR83_RS21110 (HZR83_21100)	truD	4402926..4403975 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
HZR83_RS21115 (HZR83_21105)	ispF	4403972..4404451 (-)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HZR83_RS21120 (HZR83_21110)	ispD	4404451..4405161 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=406296 HZR83_RS21090 WP_000081550.1 4399230..4400222(-) (rpoS) [Escherichia coli strain 005008]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=406296 HZR83_RS21090 WP_000081550.1 4399230..4400222(-) (rpoS) [Escherichia coli strain 005008]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715