Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GO995_RS09170 Genome accession   NZ_CP046624
Coordinates   1846309..1847568 (-) Length   419 a.a.
NCBI ID   WP_157629466.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_G3     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841309..1852568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS09140 (GO995_09140) - 1841374..1842948 (-) 1575 WP_039696142.1 membrane protein -
  GO995_RS09615 - 1842991..1843119 (-) 129 WP_274379100.1 hypothetical protein -
  GO995_RS09145 (GO995_09145) - 1843235..1843552 (-) 318 WP_006531413.1 DUF1292 domain-containing protein -
  GO995_RS09150 (GO995_09150) ruvX 1843585..1844004 (-) 420 WP_020917593.1 Holliday junction resolvase RuvX -
  GO995_RS09155 (GO995_09155) - 1844001..1844270 (-) 270 WP_003066890.1 IreB family regulatory phosphoprotein -
  GO995_RS09160 (GO995_09160) spx 1844512..1844910 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  GO995_RS09165 (GO995_09165) recA 1845108..1846262 (-) 1155 WP_039696214.1 recombinase RecA Machinery gene
  GO995_RS09170 (GO995_09170) cinA 1846309..1847568 (-) 1260 WP_157629466.1 competence/damage-inducible protein A Machinery gene
  GO995_RS09175 (GO995_09175) - 1847682..1848794 (-) 1113 WP_238385875.1 MFS transporter -
  GO995_RS09180 (GO995_09180) - 1849007..1849564 (-) 558 WP_162307933.1 DNA-3-methyladenine glycosylase I -
  GO995_RS09185 (GO995_09185) ruvA 1849594..1850187 (-) 594 WP_074869549.1 Holliday junction branch migration protein RuvA -
  GO995_RS09190 (GO995_09190) mutL 1850188..1852128 (-) 1941 WP_157629469.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45828.22 Da        Isoelectric Point: 5.0837

>NTDB_id=406202 GO995_RS09170 WP_157629466.1 1846309..1847568(-) (cinA) [Streptococcus ruminicola strain CNU_G3]
MKAEIIAVGTEILTGQITNTNAQFLSEEFAKLGIDVFFQTAVGDNEERLLSIIDLASKRSDLVVLCGGLGPTEDDLTKQT
LAKYLGRNLVFDEQASKRLDEFFATRPQFTRTANNERQAQLIEGSTPLQNSTGLAVGGVIEVDGVTYVVLPGPPSELKPM
VWDYLVPLLSSDHKQLYSRVLRFFGIGESQLVTVLSDLIDNQIDPTIAPYAKTGEVTLRLSTKADDIESAKEKLDQLEQK
ILSKKTLNSIPLENLLYGYGDDNSMARVVFDLLKKKHKTITAAESLTAGLFQSSIADFSGSSSVFNGGFVTYSIEEKSKM
LQIPLEELQKHGVVSHFTAEKMAEQSRKLTDADFGIGLTGVAGPDSLEGHPAGTVFIGIATREKVHSIRVLIGGRSRSDV
RHIACLYAFNLVRQALLQD

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=406202 GO995_RS09170 WP_157629466.1 1846309..1847568(-) (cinA) [Streptococcus ruminicola strain CNU_G3]
ATGAAAGCTGAGATTATCGCTGTAGGAACAGAGATTTTAACAGGACAAATCACAAATACGAATGCACAATTTCTATCAGA
GGAATTTGCTAAGTTAGGGATTGATGTCTTTTTCCAAACGGCAGTTGGGGACAATGAAGAACGTCTGCTGTCTATCATTG
ATTTGGCAAGTAAGCGCAGTGATTTAGTAGTTCTTTGCGGTGGTTTAGGACCAACCGAAGATGATTTGACAAAACAAACT
TTGGCAAAATATCTAGGACGTAACTTGGTTTTTGATGAACAGGCAAGTAAACGTTTGGATGAATTCTTTGCGACACGTCC
TCAATTTACAAGAACAGCTAACAATGAACGCCAAGCTCAACTGATTGAAGGTTCAACTCCTTTGCAAAATAGCACTGGTT
TGGCTGTAGGTGGAGTGATTGAAGTTGACGGCGTCACTTATGTTGTTCTTCCTGGCCCACCAAGTGAGCTTAAGCCCATG
GTCTGGGATTATTTAGTGCCTTTGTTATCTAGCGACCATAAGCAACTTTATTCACGTGTTTTGCGTTTCTTTGGCATTGG
AGAAAGCCAACTGGTAACTGTTTTATCAGATTTGATTGACAACCAAATCGATCCAACCATTGCGCCATATGCTAAGACAG
GCGAAGTAACGCTGCGTTTGTCAACGAAAGCAGACGACATTGAATCAGCTAAGGAAAAACTAGACCAGCTAGAGCAAAAA
ATTCTTTCTAAGAAGACTTTAAATAGCATTCCACTTGAGAATTTGCTTTATGGTTACGGTGATGACAATAGTATGGCGCG
TGTTGTTTTTGATTTGCTTAAGAAAAAACACAAGACTATCACAGCTGCAGAAAGTTTAACAGCAGGGCTATTTCAATCAA
GTATTGCAGACTTCTCAGGCTCTTCATCAGTCTTTAATGGTGGTTTTGTGACTTATAGCATTGAAGAAAAATCAAAAATG
CTTCAGATTCCATTAGAAGAGTTGCAAAAACATGGGGTTGTTAGTCACTTTACAGCTGAGAAAATGGCTGAGCAATCTCG
CAAGTTAACAGATGCTGATTTTGGGATTGGATTGACAGGAGTTGCAGGACCAGATAGTTTAGAAGGTCACCCAGCGGGAA
CAGTTTTCATTGGTATTGCTACTAGAGAAAAAGTTCATTCTATTCGTGTTCTCATAGGTGGACGAAGCCGTTCAGATGTG
CGTCATATTGCATGTTTGTATGCATTTAACTTAGTACGTCAAGCTTTATTACAAGATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)

Competence-damaged protein (CinA)

(263-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.599

100

0.716
  cinA Streptococcus mutans UA159

71.942

99.523

0.716
  cinA Streptococcus mitis NCTC 12261

70.644

100

0.706
  cinA Streptococcus pneumoniae Rx1

70.167

100

0.702
  cinA Streptococcus pneumoniae TIGR4

70.167

100

0.702
  cinA Streptococcus pneumoniae R6

70.167

100

0.702
  cinA Streptococcus pneumoniae D39

69.928

100

0.699
  cinA Streptococcus suis isolate S10

54.567

99.284

0.542
  cinA Bacillus subtilis subsp. subtilis str. 168

45.735

100

0.461

Multiple sequence alignment