Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GOM46_RS01370 Genome accession   NZ_CP046525
Coordinates   269250..270746 (+) Length   498 a.a.
NCBI ID   WP_178895474.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 264250..275746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01345 (GOM46_01330) - 264358..264546 (+) 189 WP_006150292.1 DNA-directed RNA polymerase subunit beta -
  GOM46_RS01350 (GOM46_01335) endA 264592..265419 (+) 828 WP_006150172.1 DNA/RNA non-specific endonuclease Machinery gene
  GOM46_RS01355 (GOM46_01340) - 265538..266869 (+) 1332 WP_006150075.1 hemolysin family protein -
  GOM46_RS01365 (GOM46_01350) amiA 267205..269184 (+) 1980 WP_006150231.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS01370 (GOM46_01355) amiC 269250..270746 (+) 1497 WP_178895474.1 ABC transporter permease Regulator
  GOM46_RS01375 (GOM46_01360) amiD 270746..271672 (+) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  GOM46_RS01380 (GOM46_01365) amiE 271681..272748 (+) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS01385 (GOM46_01370) amiF 272759..273685 (+) 927 WP_006150242.1 ATP-binding cassette domain-containing protein Regulator
  GOM46_RS01390 (GOM46_01375) - 273840..274040 (+) 201 WP_006150329.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55705.13 Da        Isoelectric Point: 9.2133

>NTDB_id=405045 GOM46_RS01370 WP_178895474.1 269250..270746(+) (amiC) [Streptococcus infantis strain SO]
MKKYVFMRILRSLVSIFLVTTLIYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
SIDPSVTVDANDTNKAIYEKYIQQLGNGWTLGEFTESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPSQADAREVANYGKGDPYTATESNYQYPSMITSSAIAGLIGLAISYAIAVPLGSAMARYKNTWIDSFSTGA
LTFLLALPTIALVYIIRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGLAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGSIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNNMVVGLVFIFTCVSIFSYLIGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=405045 GOM46_RS01370 WP_178895474.1 269250..270746(+) (amiC) [Streptococcus infantis strain SO]
ATGAAAAAATATGTTTTTATGCGTATCTTGCGGTCGTTAGTTTCTATCTTTTTAGTAACGACCTTGATTTACACAATCAT
CTATACGATGGTTCCACGGAAGTTGATCTTCAAACAAGATACTAACTACAATAAAATTGCAACTACAGCTGATAAACGCG
ATAACTATGAAAATACCGTTTATGAGCGTATGGGGTATATCGAATATTACGATACAAAAGAGTTGCAGGAAAAAGCTAGT
AGCATTGACCCTTCTGTTACAGTAGATGCAAATGATACAAATAAAGCTATCTATGAAAAATACATCCAACAACTTGGGAA
CGGTTGGACTTTAGGTGAGTTTACAGAGAGCGGTCAATTCTATGCTACTCGTGAAATCCCTATTTTCGAGCGTGTGTTCA
AATTCTATGCAAACTTGCTTGATATTGACCATACAAACAAGATTCAAGACCCAGAAAATCCTAACTTAGAGCGTTATTTG
CGTTTTGAAAACGATCCAGCTATCGGATGGTCTTTAGTAGGTTCAGGGACTAAACATAAATACCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTTCATCAGAACTTTGTGAACTTGAACCTAGGAGATTCTTACCCAACTTATGCGAATACTCCTGTAC
TTCAAGTTATCACACAAGGGCAAGGACAAACGAAGACTTCTGAAGTTCAATTCCCAACTGGGAAGAAAACTTCATCAGTC
AATATCTACACAAGAACTTATAAATCACCAAGTCAGGCGGATGCACGTGAAGTAGCGAACTACGGTAAAGGTGATCCATA
TACAGCTACTGAAAGCAACTATCAGTATCCATCTATGATTACCAGTTCTGCTATTGCTGGTTTGATTGGCCTTGCAATTT
CGTACGCGATTGCGGTTCCACTTGGTTCTGCAATGGCTCGTTACAAGAATACTTGGATTGATAGTTTCTCTACAGGAGCT
TTAACATTCTTACTTGCTCTTCCAACTATCGCTCTTGTCTATATCATTCGTTTGATTGGTTCTTCAATTGGACTCCCTGA
TTCATTCCCTATCTTGGGTGCTGGAGACTGGCGTTCATATGTACTACCTGCAGTTATTCTTGGTTTACTTGGTGCTCCTG
GTTTGGCTATCTGGATTCGTCGTTACATGATTGACTTACAATCACAAGACTTTGTTCGTTTTGCACGTGCAAAAGGTCTT
TCTGAGAAAGAAATTTCTAATAAACACATCTTTAAAAATGCCATGGTACCACTTGTTTCAGGTATTCCTGGTTCTATTAT
CGGTGTTATTGGTGGAGCTACTCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCGTCAAATAATAACATGGTTGTTGGTCTAGTTTTCATCTTTACTTGCGTCTCAATCTTCTCTTACTTAATTGGGGAT
ATTTGGATGACAATTATTGACCCACGTATTAAGTTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.51

100

0.775
  amiC Streptococcus thermophilus LMG 18311

77.51

100

0.775
  amiC Streptococcus thermophilus LMD-9

77.108

100

0.771

Multiple sequence alignment