Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GOM46_RS01385 Genome accession   NZ_CP046525
Coordinates   272759..273685 (+) Length   308 a.a.
NCBI ID   WP_006150242.1    Uniprot ID   F5VZ47
Organism   Streptococcus infantis strain SO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 267759..278685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01370 (GOM46_01355) amiC 269250..270746 (+) 1497 WP_178895474.1 ABC transporter permease Regulator
  GOM46_RS01375 (GOM46_01360) amiD 270746..271672 (+) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  GOM46_RS01380 (GOM46_01365) amiE 271681..272748 (+) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS01385 (GOM46_01370) amiF 272759..273685 (+) 927 WP_006150242.1 ATP-binding cassette domain-containing protein Regulator
  GOM46_RS01390 (GOM46_01375) - 273840..274040 (+) 201 WP_006150329.1 hypothetical protein -
  GOM46_RS01395 (GOM46_01380) - 274387..276786 (-) 2400 Protein_251 glycosyl hydrolase family 95 catalytic domain-containing protein -
  GOM46_RS01400 (GOM46_01385) - 277070..277315 (+) 246 WP_004251708.1 YneF family protein -
  GOM46_RS01405 (GOM46_01390) racE 277523..278317 (+) 795 WP_235083738.1 glutamate racemase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34938.08 Da        Isoelectric Point: 6.5124

>NTDB_id=405048 GOM46_RS01385 WP_006150242.1 272759..273685(+) (amiF) [Streptococcus infantis strain SO]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHFVWANQAELERYKKEMK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=405048 GOM46_RS01385 WP_006150242.1 272759..273685(+) (amiF) [Streptococcus infantis strain SO]
ATGTCTGAAAAATTAGTAGAAGTTAAAGACTTAGAGATTTCCTTCGGTGAAGGAAGCAAAAAGTTTGTAGCCGTTAAAAA
TGCAAACTTCTTTATCAACAAAGGTGAAACATTCTCTCTCGTTGGAGAATCTGGTAGTGGTAAGACAACAATTGGTCGTG
CCATTATCGGCCTTAATGATACCAGCAAAGGGGATATCATCTTTGATGGACAAAAAATCAATGGTAAAAAATCACGTGAA
CAAGCAGCGGAATTAATCCGTCGCATTCAAATGATTTTCCAAGACCCAGCCGCAAGTTTGAATGAACGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACCACCATTTATTTAAAGACGAAGAAGAAAGAAAAGAAAAAGTTCAAAACATCA
TTCGTGAAGTGGGACTTTTGGCTGAACACTTGACTCGTTATCCACATGAGTTTTCAGGTGGACAACGTCAACGTATCGGG
ATTGCTCGTGCCTTGGTTATGCAACCTGACTTCGTGATCGCGGATGAGCCAATTTCAGCCTTGGACGTTTCAGTGCGTGC
CCAAGTTTTGAACTTGCTCAAGAAATTCCAAAAGGAATTGGGCTTGACTTATCTCTTTATCGCTCACGATTTGTCAGTAG
TTCGTTTCATCTCTGATCGTATCGCGGTAATTTATAAGGGTGTCATTGTTGAAGTGGCTGAAACTGAAGAATTGTTTAAC
AATCCAGTTCATCCATACACACAAGCACTGCTTTCAGCTGTACCAATCCCAGATCCAATCTTGGAACGTAAAAAAGTTTT
GAAAGTCTATGATCCAGATCAACATGACTACGAAACTGATAAACCTTCAATGGTAGAAATTCGTCCAGGTCATTTTGTTT
GGGCTAACCAAGCAGAATTGGAACGCTATAAAAAAGAAATGAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5VZ47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.275

99.351

0.857
  amiF Streptococcus salivarius strain HSISS4

86.275

99.351

0.857
  amiF Streptococcus thermophilus LMD-9

85.948

99.351

0.854

Multiple sequence alignment