Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GOM46_RS01375 Genome accession   NZ_CP046525
Coordinates   270746..271672 (+) Length   308 a.a.
NCBI ID   WP_006150281.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 265746..276672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01365 (GOM46_01350) amiA 267205..269184 (+) 1980 WP_006150231.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS01370 (GOM46_01355) amiC 269250..270746 (+) 1497 WP_178895474.1 ABC transporter permease Regulator
  GOM46_RS01375 (GOM46_01360) amiD 270746..271672 (+) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  GOM46_RS01380 (GOM46_01365) amiE 271681..272748 (+) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS01385 (GOM46_01370) amiF 272759..273685 (+) 927 WP_006150242.1 ATP-binding cassette domain-containing protein Regulator
  GOM46_RS01390 (GOM46_01375) - 273840..274040 (+) 201 WP_006150329.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34598.41 Da        Isoelectric Point: 9.2759

>NTDB_id=405046 GOM46_RS01375 WP_006150281.1 270746..271672(+) (amiD) [Streptococcus infantis strain SO]
MSTISNDKFQFVKRDDFASEAIDAPAYSYWGSVFRQFLKKKSTIIMLGILISIVLMSFIYPMFSDFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINIVIGVIVGGIWGISKSVDRVMMEVYNVISNIPHLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYSIRIQIMRYRDLEYNLASRTLGTPTYKIVIKNIMPQLVSVIVTTTSQMLPAFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=405046 GOM46_RS01375 WP_006150281.1 270746..271672(+) (amiD) [Streptococcus infantis strain SO]
ATGTCTACAATTAGTAATGATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGCAATTGATGCTCCTGCCTA
CTCATATTGGGGTTCTGTTTTTAGACAATTTTTGAAAAAGAAATCAACCATCATCATGCTTGGTATTTTGATTTCAATCG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTGATTTCGACTTCAATGATGTAAGTAAGGTAAATGATTTTAGCGCTCGC
TACATTAAACCAAATGCGGAACATTGGTTCGGTACAGATAGTAATGGTAAGTCTCTTTTTGATGGTGTCTGGTTTGGAGC
CCGTAACTCTATCTTGATTTCCGTTATTGCGACCTTTATCAATATTGTAATTGGTGTTATTGTCGGCGGTATCTGGGGTA
TTTCAAAATCAGTTGACCGCGTCATGATGGAAGTTTATAACGTTATTTCCAACATCCCACACTTATTGATTGTTATTGTT
TTGACTTACTCTATTGGTGCAGGTTTCTGGAACTTGATTTTTGCCATGAGTGTAACGACTTGGATTGGGATTGCCTACTC
AATTCGTATCCAAATCATGCGTTACCGTGACTTAGAGTACAACCTTGCTTCACGCACACTCGGAACTCCAACATACAAAA
TTGTCATTAAAAATATCATGCCACAATTGGTATCTGTTATTGTTACGACTACATCACAAATGCTTCCAGCATTTATCTCC
TATGAAGCCTTTCTGTCATTCTTTGGACTTGGATTGCCTATTACAGTACCAAGTTTAGGTCGATTGATTTCAGATTATTC
ACAGAACGTAACAACAAATGCATACCTCTTCTGGATTCCATTGACAACTTTGGTCTTGGTATCCTTGTCACTTTTCGTAG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(122-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment