Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM46_RS01365 Genome accession   NZ_CP046525
Coordinates   267205..269184 (+) Length   659 a.a.
NCBI ID   WP_006150231.1    Uniprot ID   F5VZ51
Organism   Streptococcus infantis strain SO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262205..274184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS01335 (GOM46_01320) - 262824..263054 (+) 231 WP_033685906.1 DUF1146 family protein -
  GOM46_RS01340 (GOM46_01325) murA 263079..264365 (+) 1287 WP_235083736.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GOM46_RS01345 (GOM46_01330) - 264358..264546 (+) 189 WP_006150292.1 DNA-directed RNA polymerase subunit beta -
  GOM46_RS01350 (GOM46_01335) endA 264592..265419 (+) 828 WP_006150172.1 DNA/RNA non-specific endonuclease Machinery gene
  GOM46_RS01355 (GOM46_01340) - 265538..266869 (+) 1332 WP_006150075.1 hemolysin family protein -
  GOM46_RS01365 (GOM46_01350) amiA 267205..269184 (+) 1980 WP_006150231.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS01370 (GOM46_01355) amiC 269250..270746 (+) 1497 WP_178895474.1 ABC transporter permease Regulator
  GOM46_RS01375 (GOM46_01360) amiD 270746..271672 (+) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  GOM46_RS01380 (GOM46_01365) amiE 271681..272748 (+) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  GOM46_RS01385 (GOM46_01370) amiF 272759..273685 (+) 927 WP_006150242.1 ATP-binding cassette domain-containing protein Regulator
  GOM46_RS01390 (GOM46_01375) - 273840..274040 (+) 201 WP_006150329.1 hypothetical protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72393.18 Da        Isoelectric Point: 4.7815

>NTDB_id=405044 GOM46_RS01365 WP_006150231.1 267205..269184(+) (amiA) [Streptococcus infantis strain SO]
MKKSRILAVAGVALLATGVLAACGSSKSSNAEAPKAYGYTYTADPETLDYLISGKQSTKVATSNGIDGLFTNDQYGNLTP
AVAEDWSVSQDGLTYTYKIRKGVKWFTSDGEEYAEVTANDFVTGLKHAADNKSAALYLAQNSVKGLADYISGNNTDFSAV
GIKAVDDYTLQYTLNKPEPYWNSKLSYGIFWPLNAEFEKSKGKDFGKATDPTSLLYNGPFLLKGLTAKSSIEFAKNDQYW
DKDNVHIDTVTLSYYDGSDQESLERNFTNGAYSYARLFPTSSNYSKVAETYKDNIYYTPQGAGIAGLGVNIDRQSYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTAYSAQLNGKDGAALAVRNLFVKPDFVSAGDKTFGDLVTEKVVSYGDEWKD
VNFADAQDGLYNADKAKAELAKAKKVLEADGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETALGTDNVVIDIQQITTDE
LQNATYYAASAAAEDWDLSGAVGWNPDYDDPSTYLDILKTTNSETTKSYMGYDNPSNPAVAQVGLNDYDKLVDDAASETT
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFSASYTQSGDKGSDVYFKYLKLQANTVTAKEYKEAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=405044 GOM46_RS01365 WP_006150231.1 267205..269184(+) (amiA) [Streptococcus infantis strain SO]
ATGAAAAAAAGTCGGATTCTTGCGGTAGCGGGTGTTGCGCTACTTGCTACAGGTGTTCTTGCAGCTTGCGGTTCTTCAAA
ATCATCAAATGCTGAAGCACCAAAGGCTTATGGCTATACTTATACTGCTGACCCAGAAACATTGGACTACCTAATTTCTG
GTAAACAAAGTACAAAAGTTGCTACTTCAAATGGTATCGATGGTCTCTTTACAAATGACCAATATGGAAATCTAACTCCT
GCAGTCGCTGAAGACTGGTCAGTATCTCAAGATGGATTGACATATACATACAAGATTCGTAAAGGTGTAAAATGGTTCAC
ATCTGATGGTGAAGAATATGCAGAAGTAACTGCAAATGACTTTGTTACAGGTTTAAAACACGCAGCTGACAATAAATCAG
CCGCTCTTTACCTAGCACAAAATTCTGTTAAAGGATTGGCTGACTATATATCAGGGAACAATACAGACTTTTCTGCAGTA
GGTATTAAAGCTGTTGATGATTACACTCTTCAATATACATTGAACAAACCTGAACCATACTGGAACTCTAAATTATCTTA
TGGAATCTTCTGGCCTTTGAATGCAGAGTTTGAAAAATCAAAAGGTAAAGACTTTGGTAAAGCGACAGATCCAACATCAT
TGCTTTACAATGGTCCATTCTTGCTTAAGGGATTGACAGCTAAGTCTTCTATCGAATTTGCAAAGAATGATCAGTATTGG
GATAAAGACAATGTTCACATCGATACTGTAACACTTTCTTACTATGATGGTTCAGACCAAGAGTCACTTGAGCGTAACTT
TACAAATGGTGCATATAGTTATGCACGTCTCTTCCCTACTAGCTCAAACTATTCTAAAGTAGCAGAAACATATAAAGATA
ATATCTACTATACCCCACAGGGAGCTGGTATTGCTGGTTTAGGTGTTAACATTGACCGTCAAAGTTATAAATATACATCA
AAAACAACTGACGAGGAAAAGACTTCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGTCAAGCTTTGAACTTTGCTTT
TGACCGTACTGCTTATTCAGCTCAGCTAAATGGTAAGGATGGAGCCGCCCTTGCTGTTCGTAACCTCTTTGTCAAACCTG
ACTTTGTTTCTGCTGGAGATAAGACATTTGGTGACTTGGTTACTGAGAAAGTTGTTTCTTATGGTGATGAATGGAAAGAC
GTAAACTTTGCGGATGCTCAAGATGGTCTTTACAATGCTGATAAGGCTAAAGCAGAACTAGCTAAAGCTAAAAAAGTCCT
TGAAGCAGATGGTGTAAAATTCCCAATCCACTTGGATATTCCAGTTGACCAAACATCTAAAAACTATATCGCTCGTATCC
AATCATTTAAACAATCTGTTGAGACGGCTTTGGGTACAGATAATGTAGTTATCGATATTCAACAAATCACTACAGATGAA
TTACAAAATGCCACATACTACGCAGCTAGTGCGGCAGCAGAAGATTGGGACCTTTCAGGTGCTGTTGGATGGAATCCAGA
CTATGATGATCCATCAACATACCTTGATATCTTGAAAACAACTAACAGTGAAACAACTAAGTCCTACATGGGCTATGATA
ATCCATCAAACCCAGCGGTTGCTCAAGTTGGTTTGAATGATTATGACAAATTAGTTGATGATGCAGCTAGTGAAACAACC
GATCTTAATAAACGTTATGAGAAATATGCAGCAGCTCAAGCTTGGTTGACAGATAGCTCACTCTTCCTTCCAGCTATGTC
TTCTTCAGGAGCAGCACCAATCATTTCTCGCGTAGTACCATTCTCAGCATCTTATACTCAATCTGGTGATAAAGGTTCAG
ATGTTTACTTCAAATATCTTAAATTGCAAGCGAACACTGTAACTGCTAAAGAGTACAAAGAAGCTCGTGAAAAATGGCTC
AAAGAAAAAGCTGAATCAAACGAGAAAGCTCAAAAAGAATTAGCGAGCCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5VZ51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.499

100

0.695
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677

Multiple sequence alignment