Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   GOM47_RS00935 Genome accession   NZ_CP046524
Coordinates   172000..172413 (+) Length   137 a.a.
NCBI ID   WP_235080782.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 167000..177413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS00900 (GOM47_00900) - 168271..168636 (+) 366 WP_000286396.1 DUF1033 family protein -
  GOM47_RS00905 (GOM47_00905) comGA/cglA/cilD 168706..169647 (+) 942 WP_235080777.1 competence type IV pilus ATPase ComGA Machinery gene
  GOM47_RS00910 (GOM47_00910) comGB/cglB 169595..170611 (+) 1017 WP_235081262.1 competence type IV pilus assembly protein ComGB Machinery gene
  GOM47_RS00915 (GOM47_00915) comGC/cglC 170613..170936 (+) 324 WP_235080778.1 competence type IV pilus major pilin ComGC Machinery gene
  GOM47_RS00920 (GOM47_00920) comGD/cglD 170899..171333 (+) 435 WP_235080779.1 competence type IV pilus minor pilin ComGD Machinery gene
  GOM47_RS00925 (GOM47_00925) comGE/cglE 171296..171598 (+) 303 WP_235080780.1 competence type IV pilus minor pilin ComGE Machinery gene
  GOM47_RS00930 (GOM47_00930) comGF/cglF 171561..172022 (+) 462 WP_235080781.1 competence type IV pilus minor pilin ComGF Machinery gene
  GOM47_RS00935 (GOM47_00935) comGG/cglG 172000..172413 (+) 414 WP_235080782.1 competence type IV pilus minor pilin ComGG Machinery gene
  GOM47_RS00940 (GOM47_00940) - 172446..173036 (+) 591 WP_235080783.1 class I SAM-dependent methyltransferase -
  GOM47_RS00945 (GOM47_00945) comYH 173095..174048 (+) 954 WP_235080784.1 class I SAM-dependent methyltransferase Machinery gene
  GOM47_RS00950 (GOM47_00950) - 174098..175288 (+) 1191 WP_235080785.1 acetate kinase -
  GOM47_RS00955 (GOM47_00955) rnpA 175448..175819 (+) 372 WP_000748124.1 ribonuclease P protein component -
  GOM47_RS00960 (GOM47_00960) - 175794..176606 (+) 813 WP_000728094.1 YidC/Oxa1 family membrane protein insertase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15715.18 Da        Isoelectric Point: 10.6699

>NTDB_id=404967 GOM47_RS00935 WP_235080782.1 172000..172413(+) (comGG/cglG) [Streptococcus oralis strain SOT]
MWKKQKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHHKDFALNKEKLVAFAMAKRSKDKVEQESGERVFNLGKVTYQNTK
TGFATSVRMNKSNYEFLFPSMKPKEKKTDKKQQVATDSSQELNQTKTENKADKKANS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=404967 GOM47_RS00935 WP_235080782.1 172000..172413(+) (comGG/cglG) [Streptococcus oralis strain SOT]
GTGTGGAAAAAGCAAAAAGTTAAGGCAGGCGTTCTCCTATATGCAGTGACTATGGCAGCCATCTTTAGTCTATTGCTGCA
GTTTTATTTGAATCGGCAAGTAGCCCATCACAAAGACTTTGCCCTAAACAAAGAAAAGTTGGTAGCTTTTGCCATGGCCA
AGCGAAGTAAAGATAAGGTTGAACAAGAAAGTGGGGAACGAGTCTTTAACCTGGGAAAAGTTACTTATCAAAATACGAAA
ACAGGTTTTGCAACAAGTGTTCGAATGAATAAGAGCAACTATGAATTTCTCTTTCCTTCGATGAAACCCAAGGAAAAGAA
AACGGATAAAAAGCAACAGGTAGCGACTGATTCAAGTCAAGAACTAAATCAGACAAAAACAGAAAATAAGGCAGATAAGA
AAGCCAATTCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

78.512

88.321

0.693
  comGG/cglG Streptococcus pneumoniae Rx1

80.342

85.401

0.686
  comGG/cglG Streptococcus pneumoniae D39

80.342

85.401

0.686
  comGG/cglG Streptococcus pneumoniae R6

80.342

85.401

0.686
  comGG/cglG Streptococcus pneumoniae TIGR4

80.342

85.401

0.686
  comGG/cglG Streptococcus mitis SK321

75.207

88.321

0.664

Multiple sequence alignment