Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | GOM47_RS00945 | Genome accession | NZ_CP046524 |
| Coordinates | 173095..174048 (+) | Length | 317 a.a. |
| NCBI ID | WP_235080784.1 | Uniprot ID | - |
| Organism | Streptococcus oralis strain SOT | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 168095..179048
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GOM47_RS00900 (GOM47_00900) | - | 168271..168636 (+) | 366 | WP_000286396.1 | DUF1033 family protein | - |
| GOM47_RS00905 (GOM47_00905) | comGA/cglA/cilD | 168706..169647 (+) | 942 | WP_235080777.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GOM47_RS00910 (GOM47_00910) | comGB/cglB | 169595..170611 (+) | 1017 | WP_235081262.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GOM47_RS00915 (GOM47_00915) | comGC/cglC | 170613..170936 (+) | 324 | WP_235080778.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GOM47_RS00920 (GOM47_00920) | comGD/cglD | 170899..171333 (+) | 435 | WP_235080779.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GOM47_RS00925 (GOM47_00925) | comGE/cglE | 171296..171598 (+) | 303 | WP_235080780.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| GOM47_RS00930 (GOM47_00930) | comGF/cglF | 171561..172022 (+) | 462 | WP_235080781.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GOM47_RS00935 (GOM47_00935) | comGG/cglG | 172000..172413 (+) | 414 | WP_235080782.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| GOM47_RS00940 (GOM47_00940) | - | 172446..173036 (+) | 591 | WP_235080783.1 | class I SAM-dependent methyltransferase | - |
| GOM47_RS00945 (GOM47_00945) | comYH | 173095..174048 (+) | 954 | WP_235080784.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GOM47_RS00950 (GOM47_00950) | - | 174098..175288 (+) | 1191 | WP_235080785.1 | acetate kinase | - |
| GOM47_RS00955 (GOM47_00955) | rnpA | 175448..175819 (+) | 372 | WP_000748124.1 | ribonuclease P protein component | - |
| GOM47_RS00960 (GOM47_00960) | - | 175794..176606 (+) | 813 | WP_000728094.1 | YidC/Oxa1 family membrane protein insertase | - |
| GOM47_RS00965 (GOM47_00965) | jag | 176624..177613 (+) | 990 | WP_235080786.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| GOM47_RS00970 (GOM47_00970) | - | 177664..178287 (+) | 624 | WP_235080787.1 | ribonuclease P | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35633.69 Da Isoelectric Point: 4.2135
>NTDB_id=404968 GOM47_RS00945 WP_235080784.1 173095..174048(+) (comYH) [Streptococcus oralis strain SOT]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETKLEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLVVEELLDQEEVSILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADAIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDTIASRYHVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKDWLKDEVSLATIITLPEDIFSTVSQAKSIFVLQKKTEQELQPFVYPLESLQDPAALLKFKENFQKWSKGTEM
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETKLEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLVVEELLDQEEVSILEIGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADAIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDTIASRYHVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKDWLKDEVSLATIITLPEDIFSTVSQAKSIFVLQKKTEQELQPFVYPLESLQDPAALLKFKENFQKWSKGTEM
Nucleotide
Download Length: 954 bp
>NTDB_id=404968 GOM47_RS00945 WP_235080784.1 173095..174048(+) (comYH) [Streptococcus oralis strain SOT]
ATGGATTTTGAAAAAATAGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGATGCCTTAGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACCAAACTAGAGCAGGTCAAGGAGAACAATC
AAGCTCTTAAGCGCTTAGCACTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCCCTCCTCTTGGTACTTGTTGTGGAAGAATTGCTTGA
TCAAGAGGAAGTTAGTATCCTCGAAATAGGTTCTGGTATGGGAATTTTGGGGGCTACTTTCTTGACATCTCTTGCTAAAA
AAGTGGATTACTTGGGAATTGAAGTGGATGACTTGCTGATTGATTTGGCGGCTAGCATGGCAGATGCGATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTTGTCATCAGCGACTTGCCTGTCGG
CTATTACCCAGACGACACTATCGCTTCACGCTATCATGTGGCTTCTAGCCAAGAACATACCTATGCCCACCATTTGCTCA
TGGAACAAGGTCTCAAGTACCTCAAGTCAGATGGCTATGCTATTTTTCTGGCTCCGAGTGATTTGTTGACCAGCCCTCAA
AGTGATTTGTTAAAAGATTGGCTCAAAGACGAAGTCAGTCTTGCTACCATCATCACTCTGCCAGAGGATATTTTCTCAAC
GGTCAGTCAGGCTAAGAGTATTTTCGTTTTACAGAAGAAAACCGAACAGGAACTGCAACCTTTTGTCTATCCGCTAGAAA
GTTTGCAAGATCCAGCTGCACTATTGAAATTCAAAGAAAATTTTCAAAAATGGAGCAAAGGTACTGAAATGTAA
ATGGATTTTGAAAAAATAGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGATGCCTTAGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACCAAACTAGAGCAGGTCAAGGAGAACAATC
AAGCTCTTAAGCGCTTAGCACTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTGCAGGCCAATCACCAGTTTACACCAGATGCCATTGCCCTCCTCTTGGTACTTGTTGTGGAAGAATTGCTTGA
TCAAGAGGAAGTTAGTATCCTCGAAATAGGTTCTGGTATGGGAATTTTGGGGGCTACTTTCTTGACATCTCTTGCTAAAA
AAGTGGATTACTTGGGAATTGAAGTGGATGACTTGCTGATTGATTTGGCGGCTAGCATGGCAGATGCGATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTTGTCATCAGCGACTTGCCTGTCGG
CTATTACCCAGACGACACTATCGCTTCACGCTATCATGTGGCTTCTAGCCAAGAACATACCTATGCCCACCATTTGCTCA
TGGAACAAGGTCTCAAGTACCTCAAGTCAGATGGCTATGCTATTTTTCTGGCTCCGAGTGATTTGTTGACCAGCCCTCAA
AGTGATTTGTTAAAAGATTGGCTCAAAGACGAAGTCAGTCTTGCTACCATCATCACTCTGCCAGAGGATATTTTCTCAAC
GGTCAGTCAGGCTAAGAGTATTTTCGTTTTACAGAAGAAAACCGAACAGGAACTGCAACCTTTTGTCTATCCGCTAGAAA
GTTTGCAAGATCCAGCTGCACTATTGAAATTCAAAGAAAATTTTCAAAAATGGAGCAAAGGTACTGAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
57.235 |
98.107 |
0.562 |
| comYH | Streptococcus mutans UA159 |
56.913 |
98.107 |
0.558 |