Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM48_RS08325 Genome accession   NZ_CP046523
Coordinates   1657411..1659390 (-) Length   659 a.a.
NCBI ID   WP_000749717.1    Uniprot ID   A0A428IAW3
Organism   Streptococcus oralis strain SOD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652411..1664390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS08305 (GOM48_08245) amiF 1652906..1653835 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  GOM48_RS08310 (GOM48_08250) amiE 1653846..1654913 (-) 1068 WP_000159698.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS08315 (GOM48_08255) amiD 1654922..1655848 (-) 927 WP_000103934.1 oligopeptide ABC transporter permease OppC Regulator
  GOM48_RS08320 (GOM48_08260) amiC 1655848..1657344 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  GOM48_RS08325 (GOM48_08265) amiA 1657411..1659390 (-) 1980 WP_000749717.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS08335 (GOM48_08275) - 1659903..1661234 (-) 1332 WP_000390050.1 hemolysin family protein -
  GOM48_RS08340 (GOM48_08280) endA 1661375..1662199 (-) 825 WP_001036766.1 DNA/RNA non-specific endonuclease Machinery gene
  GOM48_RS08345 (GOM48_08285) - 1662240..1662446 (-) 207 WP_000828205.1 DNA-directed RNA polymerase subunit beta -
  GOM48_RS08350 (GOM48_08290) murA 1662433..1663716 (-) 1284 WP_000411923.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GOM48_RS08355 (GOM48_08295) - 1663739..1663969 (-) 231 WP_002892633.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72892.97 Da        Isoelectric Point: 4.8417

>NTDB_id=404938 GOM48_RS08325 WP_000749717.1 1657411..1659390(-) (amiA) [Streptococcus oralis strain SOD]
MKKSRVFVTAGIALLATGVLAACGSSKSSDSTAPKSYGYVYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSEALYLAEDSVKGLADYKAGNNKDFSSV
GVKAVDDYTLEYTLNKPEPYWNSKMAYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKDNVHLDKVTLAYYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKENIFYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPRAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTAKNYIARIQSFKQSVETVLGEGNVVIDIQQVSKDE
FTNITYYAANAAAEDWDLSGGVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLILPAMSSTGAAPFISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=404938 GOM48_RS08325 WP_000749717.1 1657411..1659390(-) (amiA) [Streptococcus oralis strain SOD]
ATGAAAAAAAGTAGAGTATTTGTTACAGCAGGGATTGCTTTGCTGGCAACTGGCGTTCTCGCTGCTTGTGGTTCTTCAAA
ATCATCTGATTCAACAGCTCCAAAATCCTATGGTTATGTTTATTCAGCTGACCCAGAAACATTGGATTACCTCATTTCAG
GGAAACAAAGTACCAAAATTGCCACTTCAAATGGTATCGATGGTCTCTTTACAAATGATAAATATGGGAATTTGACTCCT
GCAGTTGCAGAAGACTGGTCAGTCTCAAAAGATGGGTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCAGATGGCGAAGAGTATGCTGAAGTGACAGCGAAAGACTTCGTAAATGGCTTGAAACACGCAGCTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAACAATAAAGACTTTTCTTCAGTA
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAACAAACCTGAACCATACTGGAACTCTAAGATGGCTTA
TTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGACTTTGCTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAAAGGTTTGACTGCTAAGTCTTCTATCGAGTTCGCTAAAAATGAACAATACTGG
GATAAAGACAATGTTCATCTTGATAAAGTAACACTTGCTTACTATGATGGTTCAGACCAAGAGTCTATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCCCGTCTTTACCCAACAAGTTCAAACTACTCTAAAGTAGAAGAAACCTACAAGGAAA
ATATCTTCTACACCCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAGGCCCTTCTTAACAAAGACTTCCGTCAGGCCTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATCAATGGTAAAGAAGGTGCTCCTCGTGCCGTTCGTAACCTCTTTGTAAAACCTG
ACTTCGTCTCTGCTGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTAAACTTTGCAGATGGTCAAGATGGACTTTTCAACGCCGATAAAGCCAAAGCCGAATTTGCCAAAGCCAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACTGCTAAAAACTATATCGCACGTATCC
AATCCTTCAAACAATCCGTTGAAACAGTGCTTGGTGAAGGCAATGTAGTCATCGATATCCAACAAGTTTCTAAAGATGAG
TTTACTAATATTACCTACTATGCGGCGAATGCAGCAGCAGAAGACTGGGATCTCTCAGGTGGCGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAAGAAACAAGC
GACTTGAATGTTCGTTATGAAAAATACGCGGCTGCTCAAGCTTGGTTGACAGATAGCTCACTCATCTTGCCAGCTATGTC
ATCAACTGGTGCTGCACCATTCATTTCTCGTGTTGTGCCATTCACAGCATCATACAGTCAATCTGGAGATAAGGGCTCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A428IAW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.273

100

0.674
  amiA3 Streptococcus thermophilus LMG 18311

67.121

100

0.672

Multiple sequence alignment