Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GOM48_RS08320 Genome accession   NZ_CP046523
Coordinates   1655848..1657344 (-) Length   498 a.a.
NCBI ID   WP_000759921.1    Uniprot ID   A0A7T3DYK8
Organism   Streptococcus oralis strain SOD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650848..1662344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS08300 (GOM48_08240) - 1651379..1652818 (+) 1440 WP_235097118.1 TrkH family potassium uptake protein -
  GOM48_RS08305 (GOM48_08245) amiF 1652906..1653835 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  GOM48_RS08310 (GOM48_08250) amiE 1653846..1654913 (-) 1068 WP_000159698.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS08315 (GOM48_08255) amiD 1654922..1655848 (-) 927 WP_000103934.1 oligopeptide ABC transporter permease OppC Regulator
  GOM48_RS08320 (GOM48_08260) amiC 1655848..1657344 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  GOM48_RS08325 (GOM48_08265) amiA 1657411..1659390 (-) 1980 WP_000749717.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS08335 (GOM48_08275) - 1659903..1661234 (-) 1332 WP_000390050.1 hemolysin family protein -
  GOM48_RS08340 (GOM48_08280) endA 1661375..1662199 (-) 825 WP_001036766.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55692.04 Da        Isoelectric Point: 9.1164

>NTDB_id=404937 GOM48_RS08320 WP_000759921.1 1655848..1657344(-) (amiC) [Streptococcus oralis strain SOD]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLVISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=404937 GOM48_RS08320 WP_000759921.1 1655848..1657344(-) (amiC) [Streptococcus oralis strain SOD]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGGTGTCTATCTTCTTGGTGACAACCTTGACCTACACGATTAT
CTATACGATGGTTCCTCGAAAACTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCAGATAAACGGG
ATAACTATGAAAATACCGTTTATGAGCGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAAAGCGAGC
ACAATGGACTCATCTGTAACAGTAGATGCCAATGATACAAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGTAA
TGGTTGGACACTCGGTGTATTCTCAGAAAGTGGTCAATTCTATGCCACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTACTCGAACTTGCTCGACATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGGAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATATCTTTTGTATTTCAACAA
TCAGTTCCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGAGACTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACGCAGGGGCAAGGACAAACCAAGACATCAGAAGTTCAATTCCCTACGGGTAAAAAGACTTCCTCTGTA
GATATTTACTCTCGTACCTACAAGTCACCAAGTCAAGCAGATGCGCGTGAGGTAGCTAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCATCAATGATTGCAAGCTCGGCTGTTGCTGGTTTGATCGGTTTGGTTATTT
CTTATGCGATTGCCATTCCTCTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATCGCTTTGGTTTACATCGTGCGCTTGATTGGATCATCTATTGGTCTGCCTGA
CTCATTTCCTATCTTGGGGGCTGGAGATTGGCGTTCCTACGTCTTGCCAGCAGTCATTCTAGGTCTATTGGGTGCGCCAA
GTACAGCTATCTGGATTCGTCGTTATATGATTGACTTGCAATCTCAAGATTTCGTTCGATTTGCTCGTGCAAAAGGACTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGGGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTTGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DYK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment