Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   GOM48_RS08305 Genome accession   NZ_CP046523
Coordinates   1652906..1653835 (-) Length   309 a.a.
NCBI ID   WP_001291316.1    Uniprot ID   A0A3R9S6I9
Organism   Streptococcus oralis strain SOD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647906..1658835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS08285 (GOM48_08225) - 1648023..1648586 (-) 564 WP_235097115.1 ECF transporter S component -
  GOM48_RS08290 (GOM48_08230) - 1649120..1649623 (-) 504 WP_235097116.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  GOM48_RS08295 (GOM48_08235) trkA 1650026..1651375 (+) 1350 WP_235097117.1 Trk system potassium transporter TrkA -
  GOM48_RS08300 (GOM48_08240) - 1651379..1652818 (+) 1440 WP_235097118.1 TrkH family potassium uptake protein -
  GOM48_RS08305 (GOM48_08245) amiF 1652906..1653835 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  GOM48_RS08310 (GOM48_08250) amiE 1653846..1654913 (-) 1068 WP_000159698.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS08315 (GOM48_08255) amiD 1654922..1655848 (-) 927 WP_000103934.1 oligopeptide ABC transporter permease OppC Regulator
  GOM48_RS08320 (GOM48_08260) amiC 1655848..1657344 (-) 1497 WP_000759921.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35044.24 Da        Isoelectric Point: 6.9903

>NTDB_id=404934 GOM48_RS08305 WP_001291316.1 1652906..1653835(-) (amiF) [Streptococcus oralis strain SOD]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGQKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=404934 GOM48_RS08305 WP_001291316.1 1652906..1653835(-) (amiF) [Streptococcus oralis strain SOD]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTTTAAATAATACCAGTAAAGGAGAGATTATCTTTGATGGCCAGAAAATTAATGGCAAAAAATCTCACAAG
GAATCCTCAGACTTGATTCGTCGTATCCAGATGATTTTTCAGGACCCTGCAGCAAGCTTGAATGAGCGTGCGACGGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTTAAAGACGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TCCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTTGTCATTGCAGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTTTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCGGACCGTATCGCAGTTATTTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCCTACACTCAAGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCGGAAGTTGCTCGATACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9S6I9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838

Multiple sequence alignment