Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GOM48_RS08315 Genome accession   NZ_CP046523
Coordinates   1654922..1655848 (-) Length   308 a.a.
NCBI ID   WP_000103934.1    Uniprot ID   A0A139PI48
Organism   Streptococcus oralis strain SOD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649922..1660848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS08295 (GOM48_08235) trkA 1650026..1651375 (+) 1350 WP_235097117.1 Trk system potassium transporter TrkA -
  GOM48_RS08300 (GOM48_08240) - 1651379..1652818 (+) 1440 WP_235097118.1 TrkH family potassium uptake protein -
  GOM48_RS08305 (GOM48_08245) amiF 1652906..1653835 (-) 930 WP_001291316.1 ATP-binding cassette domain-containing protein Regulator
  GOM48_RS08310 (GOM48_08250) amiE 1653846..1654913 (-) 1068 WP_000159698.1 ABC transporter ATP-binding protein Regulator
  GOM48_RS08315 (GOM48_08255) amiD 1654922..1655848 (-) 927 WP_000103934.1 oligopeptide ABC transporter permease OppC Regulator
  GOM48_RS08320 (GOM48_08260) amiC 1655848..1657344 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  GOM48_RS08325 (GOM48_08265) amiA 1657411..1659390 (-) 1980 WP_000749717.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34609.64 Da        Isoelectric Point: 9.3349

>NTDB_id=404936 GOM48_RS08315 WP_000103934.1 1654922..1655848(-) (amiD) [Streptococcus oralis strain SOD]
MSTIGKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=404936 GOM48_RS08315 WP_000103934.1 1654922..1655848(-) (amiD) [Streptococcus oralis strain SOD]
ATGTCAACAATCGGAAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAGTTTCTAAAGAAAAAATCAACAGTCTTTATGCTAGGAATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAGCCCAATGCTGAGCATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGGGC
GCGTAACTCTATCCTCATCTCTGTCATTGCCACTTTTATCAACCTTGTGATTGGGGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCACAATTGGTATCCGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTACCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139PI48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment