Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   MDS_RS14060 Genome accession   NC_015410
Coordinates   3054355..3054678 (-) Length   107 a.a.
NCBI ID   WP_013715876.1    Uniprot ID   A0A379IU73
Organism   Ectopseudomonas mendocina NK-01     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3049355..3059678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS14055 (MDS_2772) recC 3050775..3054191 (-) 3417 WP_013715875.1 exodeoxyribonuclease V subunit gamma -
  MDS_RS14060 (MDS_2773) comE1/comEA 3054355..3054678 (-) 324 WP_013715876.1 helix-hairpin-helix domain-containing protein Machinery gene
  MDS_RS14065 (MDS_2774) - 3054946..3055800 (-) 855 WP_041769472.1 helix-turn-helix transcriptional regulator -
  MDS_RS25765 - 3055953..3056225 (+) 273 WP_061363591.1 hypothetical protein -
  MDS_RS14070 (MDS_2775) - 3056407..3057609 (+) 1203 WP_013715878.1 MFS transporter -
  MDS_RS14075 - 3058146..3059090 (+) 945 WP_041769473.1 hypothetical protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11212.75 Da        Isoelectric Point: 4.5680

>NTDB_id=40407 MDS_RS14060 WP_013715876.1 3054355..3054678(-) (comE1/comEA) [Ectopseudomonas mendocina NK-01]
MMKIYLSSVLFAVLTSLSLAASAVETSKTEPAATASAQVSQAVTVNLNTADAETLQRELAGIGATKAQAIVAYREAHGNF
ASVDELLEVKGIGEATLDKNRDKLMVD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=40407 MDS_RS14060 WP_013715876.1 3054355..3054678(-) (comE1/comEA) [Ectopseudomonas mendocina NK-01]
ATGATGAAAATCTACCTCTCCTCTGTGTTGTTCGCCGTTCTCACCTCCCTCTCCCTTGCTGCCTCGGCGGTAGAAACTTC
GAAGACCGAACCAGCCGCTACGGCTTCTGCGCAGGTTTCTCAGGCGGTCACCGTCAATCTGAATACCGCTGATGCCGAGA
CTCTCCAGCGCGAGTTGGCGGGTATCGGGGCGACCAAGGCGCAGGCGATCGTGGCCTATCGCGAGGCTCACGGAAACTTC
GCTTCGGTTGACGAGTTACTTGAGGTCAAAGGTATCGGGGAGGCGACTCTGGACAAGAATCGCGACAAGCTCATGGTCGA
TTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379IU73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

46.847

100

0.486
  comEA/comE1 Glaesserella parasuis strain SC1401

46.296

100

0.467
  comEA Vibrio cholerae C6706

50

89.72

0.449
  comEA Vibrio cholerae strain A1552

50

89.72

0.449
  comEA Legionella pneumophila str. Paris

43.434

92.523

0.402
  comEA Legionella pneumophila strain ERS1305867

43.434

92.523

0.402
  comEA Streptococcus thermophilus LMD-9

51.852

75.701

0.393
  comEA Acinetobacter baylyi ADP1

46.591

82.243

0.383
  comEA Vibrio parahaemolyticus RIMD 2210633

40.196

95.327

0.383

Multiple sequence alignment