Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GD442_RS17910 Genome accession   NZ_CP046398
Coordinates   3583858..3585096 (-) Length   412 a.a.
NCBI ID   WP_000990692.1    Uniprot ID   A0A9X5H105
Organism   Bacillus sp. A260     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3578858..3590096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD442_RS17890 (GD442_17895) spoVS 3579271..3579531 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  GD442_RS17895 (GD442_17900) - 3579681..3580475 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  GD442_RS17900 (GD442_17905) rny 3580638..3582200 (-) 1563 WP_000204911.1 ribonuclease Y -
  GD442_RS17905 (GD442_17910) recA 3582683..3583714 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  GD442_RS17910 (GD442_17915) cinA 3583858..3585096 (-) 1239 WP_000990692.1 competence/damage-inducible protein CinA Machinery gene
  GD442_RS17915 (GD442_17920) pgsA 3585117..3585695 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GD442_RS17920 (GD442_17925) - 3585760..3586671 (-) 912 WP_000137461.1 RodZ domain-containing protein -
  GD442_RS17925 (GD442_17930) - 3586693..3587478 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  GD442_RS17930 (GD442_17935) - 3587617..3587865 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  GD442_RS17935 (GD442_17940) - 3587941..3588654 (-) 714 WP_000759604.1 SDR family oxidoreductase -
  GD442_RS17940 (GD442_17945) - 3588755..3590041 (-) 1287 WP_000411976.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45492.84 Da        Isoelectric Point: 5.2258

>NTDB_id=403913 GD442_RS17910 WP_000990692.1 3583858..3585096(-) (cinA) [Bacillus sp. A260]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTETAGVSSVFKGGVICYHNDVKQYVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=403913 GD442_RS17910 WP_000990692.1 3583858..3585096(-) (cinA) [Bacillus sp. A260]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGCAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAACCGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAATATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTACTAAAAGCGGATAT
TGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369

Multiple sequence alignment