Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GMX02_RS19690 Genome accession   NZ_CP046378
Coordinates   4466406..4467671 (+) Length   421 a.a.
NCBI ID   WP_054744931.1    Uniprot ID   -
Organism   Shewanella algae strain RQs-106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4464124..4478081 4466406..4467671 within 0


Gene organization within MGE regions


Location: 4464124..4478081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMX02_RS19680 (GMX02_19680) - 4464124..4464537 (+) 414 WP_054744933.1 pilin -
  GMX02_RS19685 (GMX02_19685) pilB 4464547..4466253 (+) 1707 WP_156020398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GMX02_RS19690 (GMX02_19690) pilC 4466406..4467671 (+) 1266 WP_054744931.1 type II secretion system F family protein Machinery gene
  GMX02_RS19695 (GMX02_19695) pilD 4467747..4468661 (+) 915 WP_156020400.1 prepilin peptidase Machinery gene
  GMX02_RS19700 (GMX02_19700) coaE 4468662..4469273 (+) 612 WP_144133415.1 dephospho-CoA kinase -
  GMX02_RS19705 (GMX02_19705) zapD 4469270..4470010 (+) 741 WP_156020401.1 cell division protein ZapD -
  GMX02_RS19710 (GMX02_19710) yacG 4470055..4470267 (+) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  GMX02_RS19715 (GMX02_19715) mutT 4470267..4470665 (+) 399 WP_044733562.1 8-oxo-dGTP diphosphatase MutT -
  GMX02_RS19740 (GMX02_19740) - 4477243..4477461 (+) 219 WP_051472875.1 helix-turn-helix domain-containing protein -
  GMX02_RS19745 (GMX02_19745) - 4477563..4478081 (+) 519 WP_037437727.1 IS630 family transposase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45730.88 Da        Isoelectric Point: 10.3084

>NTDB_id=403651 GMX02_RS19690 WP_054744931.1 4466406..4467671(+) (pilC) [Shewanella algae strain RQs-106]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGNNRDGKLSSGELRGTSITEIKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRVLLGTVLADIQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFKGFGAELPAFTQLIVNISRGLQSTW
YLFLAGIVISVWLFVRAHRNSEHFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=403651 GMX02_RS19690 WP_054744931.1 4466406..4467671(+) (pilC) [Shewanella algae strain RQs-106]
ATGGCAACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAGAATAAAGGCGCCAAAGCCCAACCCAAGATCCACACCTT
TACCTGGAAGGGGAATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGCATTACTGAGATAAAAACCC
TGCTTAAAAGCCAAGGGATTAATCCCAAGACGGTACGTAAAAAATCAGCGTCTATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATTACCCGCCAGATAGCCACTATGCTGGCTGCCGGGGTTCCCTTGGTAACAACTATTGAATTGAT
CGCCCGCGGCCATGAAAAAAATAAGGTGCGGGTACTTCTCGGCACTGTGCTAGCCGATATCCAGGCCGGCATCCCGCTGT
CCGATGCTCTTCGCCCCCATAGAGCATACTTCGATGATCTCTACGTCGACTTGGTGGCCGCCGGTGAACATTCAGGTTCC
TTGGATGCCGTATTTGATCGTATCGCCACCTACAGGGAAAAGTCAGAGGCCCTTAAGTCGAAAATTAAGAAAGCCATGTT
TTACCCTGCTGCAGTGGTGGTTGTTGCCATAGCCGTTACCGTGCTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TCTTTAAGGGATTCGGCGCCGAACTGCCTGCCTTTACCCAATTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACCTGG
TATCTATTTCTGGCTGGTATCGTTATCAGTGTCTGGCTCTTTGTCCGTGCTCACCGCAACTCAGAGCACTTCCGTAACCG
TATCGACGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCTTACATAAAGGTGCTATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAATTATGTTTAC
CGCAAAGCGCTGTTGAATGTACGTACCGAAGTAATGGCCGGGATGCAGATGAATGTGGCCATGCGTACCACCAAGCTTTT
TCCCGATATGCTAATCCAGATGGTGATGATAGGTGAAGAGTCCGGCTCATTGGATAATATGCTCAACAAAGTTGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTGATAGAACCTATTATGATGGTAGTAATCGGCACT
ATAGTCGGCGGCCTAATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.887

94.774

0.52
  pilC Acinetobacter baylyi ADP1

49.386

96.675

0.477
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

46.883

95.249

0.447
  pilC Vibrio campbellii strain DS40M4

44.913

95.724

0.43
  pilG Neisseria meningitidis 44/76-A

42.029

98.337

0.413
  pilG Neisseria gonorrhoeae MS11

42.029

98.337

0.413

Multiple sequence alignment