Detailed information NTG0403652

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GMX02_RS19695
• Genome accession: NZ_CP046378
• Coordinates: 4467747..4468661 (+)
• Length: 304 a.a.
• NCBI ID: WP_156020400.1
• Uniprot ID: -
• Organism: Shewanella algae strain RQs-106
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4464124..4478081	4467747..4468661	within	0

Gene organization within MGE regions

Location: 4464124..4478081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GMX02_RS19680 (GMX02_19680)	-	4464124..4464537 (+)	414	WP_054744933.1	pilin	-
GMX02_RS19685 (GMX02_19685)	pilB	4464547..4466253 (+)	1707	WP_156020398.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GMX02_RS19690 (GMX02_19690)	pilC	4466406..4467671 (+)	1266	WP_054744931.1	type II secretion system F family protein	Machinery gene
GMX02_RS19695 (GMX02_19695)	pilD	4467747..4468661 (+)	915	WP_156020400.1	prepilin peptidase	Machinery gene
GMX02_RS19700 (GMX02_19700)	coaE	4468662..4469273 (+)	612	WP_144133415.1	dephospho-CoA kinase	-
GMX02_RS19705 (GMX02_19705)	zapD	4469270..4470010 (+)	741	WP_156020401.1	cell division protein ZapD	-
GMX02_RS19710 (GMX02_19710)	yacG	4470055..4470267 (+)	213	WP_025886789.1	DNA gyrase inhibitor YacG	-
GMX02_RS19715 (GMX02_19715)	mutT	4470267..4470665 (+)	399	WP_044733562.1	8-oxo-dGTP diphosphatase MutT	-
GMX02_RS19740 (GMX02_19740)	-	4477243..4477461 (+)	219	WP_051472875.1	helix-turn-helix domain-containing protein	-
GMX02_RS19745 (GMX02_19745)	-	4477563..4478081 (+)	519	WP_037437727.1	IS630 family transposase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33883.22 Da
• Isoelectric Point: 6.8268

>NTDB_id=403652 GMX02_RS19695 WP_156020400.1 4467747..4468661(+) (pilD) [Shewanella algae strain RQs-106]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVVHRLPVMMKREWQQECNQYLQEYQPEFAKQLDEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide

• Length: 915 bp

>NTDB_id=403652 GMX02_RS19695 WP_156020400.1 4467747..4468661(+) (pilD) [Shewanella algae strain RQs-106]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCTGTAATAGG
CAGCTTTCTCAATGTGGTTGTCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGATGAAGCCAAGCTTAATGCACCAATAGATAACTACCCGGCCAAGTAC
AATCTGATACTGCCGAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCGATATTTGAGCTACTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCAGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATTTCGGGCACCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGTCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	48.837	99.013	0.484
pilD	Vibrio cholerae strain A1552	50	96.053	0.48
pilD	Acinetobacter nosocomialis M2	48.344	99.342	0.48
pilD	Acinetobacter baumannii D1279779	48.013	99.342	0.477
pilD	Neisseria gonorrhoeae MS11	44.84	92.434	0.414