Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GLW17_RS06645 Genome accession   NZ_CP046246
Coordinates   1431141..1432382 (-) Length   413 a.a.
NCBI ID   WP_061840016.1    Uniprot ID   A0A3G5FG81
Organism   Tetragenococcus halophilus strain YJ1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1426141..1437382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLW17_RS06625 (GLW17_06625) pgmB 1426686..1427336 (+) 651 WP_094244073.1 beta-phosphoglucomutase -
  GLW17_RS06630 (GLW17_06630) treR 1427400..1428116 (+) 717 WP_103096837.1 trehalose operon repressor -
  GLW17_RS06635 (GLW17_06635) rny 1428170..1429726 (-) 1557 WP_155224538.1 ribonuclease Y -
  GLW17_RS06640 (GLW17_06640) recA 1429984..1431027 (-) 1044 WP_014123434.1 recombinase RecA Machinery gene
  GLW17_RS06645 (GLW17_06645) cinA 1431141..1432382 (-) 1242 WP_061840016.1 competence/damage-inducible protein A Machinery gene
  GLW17_RS06650 (GLW17_06650) pgsA 1432522..1433103 (-) 582 WP_155224539.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GLW17_RS06655 (GLW17_06655) - 1433159..1434040 (-) 882 WP_014123431.1 helix-turn-helix domain-containing protein -
  GLW17_RS06660 (GLW17_06660) yfmH 1434137..1435435 (-) 1299 WP_155224540.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GLW17_RS06665 (GLW17_06665) yfmF 1435428..1436696 (-) 1269 WP_094244077.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45570.70 Da        Isoelectric Point: 4.7511

>NTDB_id=401888 GLW17_RS06645 WP_061840016.1 1431141..1432382(-) (cinA) [Tetragenococcus halophilus strain YJ1]
MKAEIIAVGTEILLGQIDNTNTTFLAEELAGLGIEVYYQSVVGDNPKRLEEALELADQRSDLTVLCGGLGPTDDDLTKQV
TAKHVGQELVTDEGGYQNLLAFFEKRERPMTENNRLQALVFKDGESLQNSNGLAVGIFYQTPTGKSYLLLPGPPNELKPM
FFNEAIPLLQNHFQTDEQLISRVLRFYGIGESELVTKLADLIKHQSNPTIASYAKPNEVTLRLTVSTTDKNDGKQKLNQM
EEVILDRVGDYFYGYGENNSLVEVVVELLKKQKKTVSAAESLTAGSFQAMLGSVSGVSEVFPGGFVTYSETTKEQLLNLD
SKMLEKYGTVSKECAEAMAIQAKKLAHSDFALSFTGVAGPDSLEDQKAGTVWIGLATEEGVESYLYHFTRNRNYIRHSAV
MTGLDLLRKKLIK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=401888 GLW17_RS06645 WP_061840016.1 1431141..1432382(-) (cinA) [Tetragenococcus halophilus strain YJ1]
ATGAAAGCAGAAATCATAGCAGTAGGTACAGAAATTTTGTTAGGACAAATTGATAATACGAATACAACTTTTTTAGCGGA
AGAATTAGCTGGATTAGGAATTGAAGTTTATTATCAAAGTGTTGTAGGAGACAATCCTAAACGCCTGGAAGAAGCATTGG
AGCTAGCGGACCAAAGAAGTGATTTAACCGTTTTGTGTGGGGGATTAGGTCCTACAGACGATGACCTAACAAAACAAGTT
ACAGCAAAACATGTAGGACAAGAGTTAGTGACAGATGAAGGGGGTTATCAAAACTTATTAGCATTTTTTGAAAAACGTGA
ACGACCAATGACAGAAAATAATCGTCTACAGGCTTTAGTTTTCAAAGATGGAGAATCTTTACAAAATAGTAATGGTTTGG
CTGTAGGGATTTTTTATCAAACACCGACAGGTAAATCTTATTTGTTATTACCAGGGCCACCTAATGAATTAAAACCGATG
TTTTTTAATGAAGCTATTCCTTTATTGCAAAATCATTTTCAAACAGATGAACAGTTAATTTCGCGCGTGTTGCGTTTTTA
TGGCATTGGAGAATCAGAACTTGTTACTAAATTAGCAGACCTAATCAAACATCAAAGCAATCCAACGATTGCATCATATG
CTAAACCTAATGAAGTTACCTTGCGTTTGACTGTTAGTACCACAGATAAAAATGATGGAAAACAAAAACTGAATCAAATG
GAAGAAGTAATATTAGATCGAGTTGGTGATTACTTTTATGGTTATGGAGAAAATAATTCTTTAGTAGAAGTTGTTGTCGA
ACTATTAAAGAAACAGAAAAAAACTGTAAGTGCAGCTGAAAGTTTGACTGCAGGTAGTTTTCAAGCAATGTTAGGCAGTG
TTTCTGGCGTTTCCGAAGTTTTTCCTGGTGGTTTTGTTACATACTCAGAAACCACCAAGGAACAGTTACTAAATCTTGAT
TCGAAAATGTTAGAAAAATATGGAACGGTTAGTAAAGAATGTGCAGAAGCGATGGCAATACAAGCGAAAAAACTAGCCCA
TAGTGACTTTGCACTTTCTTTTACAGGAGTAGCCGGACCGGATTCACTAGAAGATCAAAAAGCAGGGACAGTTTGGATAG
GTTTAGCAACTGAAGAAGGTGTGGAAAGTTATTTATACCACTTTACTCGTAATCGGAACTATATTCGTCATAGCGCAGTC
ATGACTGGCTTAGATTTATTAAGGAAAAAATTAATAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G5FG81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.306

100

0.523
  cinA Streptococcus pneumoniae R6

51.306

100

0.523
  cinA Streptococcus pneumoniae D39

51.069

100

0.521
  cinA Streptococcus mutans UA159

50.481

100

0.508
  cinA Bacillus subtilis subsp. subtilis str. 168

45.366

99.274

0.45
  cinA Streptococcus suis isolate S10

43.855

100

0.441

Multiple sequence alignment