Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GKC27_RS08320 Genome accession   NZ_CP046130
Coordinates   1674542..1675792 (+) Length   416 a.a.
NCBI ID   WP_034620034.1    Uniprot ID   -
Organism   Bacillus pumilus strain DSM 27     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1669542..1680792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS08295 (GKC27_08210) - 1670951..1671679 (+) 729 WP_003212491.1 SDR family oxidoreductase -
  GKC27_RS08300 (GKC27_08215) - 1671753..1672010 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  GKC27_RS08305 (GKC27_08220) - 1672142..1672933 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  GKC27_RS08310 (GKC27_08225) - 1672957..1673868 (+) 912 WP_003212257.1 helix-turn-helix domain-containing protein -
  GKC27_RS08315 (GKC27_08230) pgsA 1673944..1674525 (+) 582 WP_003211136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GKC27_RS08320 (GKC27_08235) cinA 1674542..1675792 (+) 1251 WP_034620034.1 competence/damage-inducible protein A Machinery gene
  GKC27_RS08325 (GKC27_08240) recA 1675969..1677009 (+) 1041 WP_003211102.1 recombinase RecA Machinery gene
  GKC27_RS08330 (GKC27_08245) rny 1677316..1678878 (+) 1563 WP_003211958.1 ribonuclease Y -
  GKC27_RS08335 (GKC27_08250) - 1678967..1679761 (+) 795 WP_003212177.1 TIGR00282 family metallophosphoesterase -
  GKC27_RS08340 (GKC27_08255) spoVS 1679963..1680223 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45699.86 Da        Isoelectric Point: 5.1489

>NTDB_id=401440 GKC27_RS08320 WP_034620034.1 1674542..1675792(+) (cinA) [Bacillus pumilus strain DSM 27]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLDLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHKDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=401440 GKC27_RS08320 WP_034620034.1 1674542..1675792(+) (cinA) [Bacillus pumilus strain DSM 27]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTGGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATCGCGAGTACGCTTGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTCCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGAATGGCTCCAGGTATGTTTATTCAAGAAAACGATACGTTTTATATGCTTCTTCCTGGTCCGCCAAGTGAACTG
CATCCAATGTTTGAGAACGAGGCGAAGCCGCTGATATCTGAGAAACTGGATTTGAAGGAAAAAATCGTGTCTGTTGTTCT
TCGCTTTTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATAAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAGACGGAAGCGAAAATTTTAGCGCGTGTAGGAGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
CTCCAAGGCCTTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGAGGAATGTTTTCTGAATGGCTGA
CAGACCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGTGAGGAAACATTGTCTTCTCATGGTGCTGTTAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGACTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.976

99.76

0.738
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment