Detailed information NTG0401404

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: GKC25_RS15800
• Genome accession: NZ_CP046128
• Coordinates: 3085300..3085986 (-)
• Length: 228 a.a.
• NCBI ID: WP_187704184.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain V17C11
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3080300..3090986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC25_RS15765 (GKC25_15600)	fliW	3080433..3080867 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
GKC25_RS15770 (GKC25_15605)	-	3080896..3081474 (-)	579	WP_034660143.1	DUF6470 family protein	-
GKC25_RS15775 (GKC25_15610)	flgL	3081523..3082434 (-)	912	WP_034660144.1	flagellar hook-associated protein FlgL	-
GKC25_RS15780 (GKC25_15615)	flgK	3082444..3083964 (-)	1521	WP_095285727.1	flagellar hook-associated protein FlgK	-
GKC25_RS15785 (GKC25_15620)	-	3083980..3084462 (-)	483	WP_034660146.1	flagellar protein FlgN	-
GKC25_RS15790 (GKC25_15625)	flgM	3084481..3084744 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
GKC25_RS15795 (GKC25_15630)	-	3084824..3085243 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
GKC25_RS15800	comFC	3085300..3085986 (-)	687	WP_187704184.1	ComF family protein	Machinery gene
GKC25_RS15805 (GKC25_15640)	-	3085983..3086276 (-)	294	WP_060597398.1	competence protein ComFB	-
GKC25_RS15810 (GKC25_15645)	comFA	3086343..3087722 (-)	1380	WP_316250400.1	DEAD/DEAH box helicase	Machinery gene
GKC25_RS15815 (GKC25_15650)	-	3087843..3088685 (-)	843	WP_034660152.1	DegV family protein	-
GKC25_RS15820 (GKC25_15655)	degU	3088903..3089592 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
GKC25_RS15825 (GKC25_15660)	degS	3089657..3090832 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26076.52 Da
• Isoelectric Point: 9.9327

>NTDB_id=401404 GKC25_RS15800 WP_187704184.1 3085300..3085986(-) (comFC) [Bacillus pumilus strain V17C11]
MICLICEGHFVAAFTWKSLLLLNDDHICIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGVKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=401404 GKC25_RS15800 WP_187704184.1 3085300..3085986(-) (comFC) [Bacillus pumilus strain V17C11]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATAT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGTCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	100	0.504
comFC/cflB	Streptococcus mitis NCTC 12261	38.428	100	0.386
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus pneumoniae Rx1	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae D39	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae R6	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae TIGR4	37.555	100	0.377