Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GKC25_RS15820 Genome accession   NZ_CP046128
Coordinates   3088903..3089592 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain V17C11     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083903..3094592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS15785 (GKC25_15620) - 3083980..3084462 (-) 483 WP_034660146.1 flagellar protein FlgN -
  GKC25_RS15790 (GKC25_15625) flgM 3084481..3084744 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKC25_RS15795 (GKC25_15630) - 3084824..3085243 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  GKC25_RS15800 comFC 3085300..3085986 (-) 687 WP_187704184.1 ComF family protein Machinery gene
  GKC25_RS15805 (GKC25_15640) - 3085983..3086276 (-) 294 WP_060597398.1 competence protein ComFB -
  GKC25_RS15810 (GKC25_15645) comFA 3086343..3087722 (-) 1380 WP_316250400.1 DEAD/DEAH box helicase Machinery gene
  GKC25_RS15815 (GKC25_15650) - 3087843..3088685 (-) 843 WP_034660152.1 DegV family protein -
  GKC25_RS15820 (GKC25_15655) degU 3088903..3089592 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  GKC25_RS15825 (GKC25_15660) degS 3089657..3090832 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  GKC25_RS15830 (GKC25_15665) - 3091054..3091722 (+) 669 WP_012011434.1 YigZ family protein -
  GKC25_RS15835 (GKC25_15670) - 3091707..3092798 (+) 1092 WP_034660153.1 LCP family protein -
  GKC25_RS15840 (GKC25_15675) - 3092834..3093901 (-) 1068 WP_034660156.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=401406 GKC25_RS15820 WP_008348273.1 3088903..3089592(-) (degU) [Bacillus pumilus strain V17C11]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=401406 GKC25_RS15820 WP_008348273.1 3088903..3089592(-) (degU) [Bacillus pumilus strain V17C11]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGGGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment