Detailed information NTG0401407

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: GKC25_RS15825
• Genome accession: NZ_CP046128
• Coordinates: 3089657..3090832 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain V17C11
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3084657..3095832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC25_RS15795 (GKC25_15630)	-	3084824..3085243 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
GKC25_RS15800	comFC	3085300..3085986 (-)	687	WP_187704184.1	ComF family protein	Machinery gene
GKC25_RS15805 (GKC25_15640)	-	3085983..3086276 (-)	294	WP_060597398.1	competence protein ComFB	-
GKC25_RS15810 (GKC25_15645)	comFA	3086343..3087722 (-)	1380	WP_316250400.1	DEAD/DEAH box helicase	Machinery gene
GKC25_RS15815 (GKC25_15650)	-	3087843..3088685 (-)	843	WP_034660152.1	DegV family protein	-
GKC25_RS15820 (GKC25_15655)	degU	3088903..3089592 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
GKC25_RS15825 (GKC25_15660)	degS	3089657..3090832 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
GKC25_RS15830 (GKC25_15665)	-	3091054..3091722 (+)	669	WP_012011434.1	YigZ family protein	-
GKC25_RS15835 (GKC25_15670)	-	3091707..3092798 (+)	1092	WP_034660153.1	LCP family protein	-
GKC25_RS15840 (GKC25_15675)	-	3092834..3093901 (-)	1068	WP_034660156.1	MraY family glycosyltransferase	-
GKC25_RS15845 (GKC25_15680)	-	3094036..3095235 (-)	1200	WP_080869554.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=401407 GKC25_RS15825 WP_003213166.1 3089657..3090832(-) (degS) [Bacillus pumilus strain V17C11]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=401407 GKC25_RS15825 WP_003213166.1 3089657..3090832(-) (degS) [Bacillus pumilus strain V17C11]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTCGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGGGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACCATGAT
CCAGCAACGCGAAAAGCAGCTGAGAGAAAGAAGAGACGATCTGGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGTCAGATCACAGTTGTTCTCAACTATCTCAATCAGGACTTACGTCAAGTTGGCGTGTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAAGAAGAAGAACGCAAAAGGGTGTCCCGGGA
AATTCATGACGGTCCGGCCCAGATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTCAGAGACCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATTACGTTCCAATGCCTAGGGGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAACAAAAACAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841