Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GKC25_RS15810 Genome accession   NZ_CP046128
Coordinates   3086343..3087722 (-) Length   459 a.a.
NCBI ID   WP_316250400.1    Uniprot ID   -
Organism   Bacillus pumilus strain V17C11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3081343..3092722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS15775 (GKC25_15610) flgL 3081523..3082434 (-) 912 WP_034660144.1 flagellar hook-associated protein FlgL -
  GKC25_RS15780 (GKC25_15615) flgK 3082444..3083964 (-) 1521 WP_095285727.1 flagellar hook-associated protein FlgK -
  GKC25_RS15785 (GKC25_15620) - 3083980..3084462 (-) 483 WP_034660146.1 flagellar protein FlgN -
  GKC25_RS15790 (GKC25_15625) flgM 3084481..3084744 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKC25_RS15795 (GKC25_15630) - 3084824..3085243 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  GKC25_RS15800 comFC 3085300..3085986 (-) 687 WP_187704184.1 ComF family protein Machinery gene
  GKC25_RS15805 (GKC25_15640) - 3085983..3086276 (-) 294 WP_060597398.1 competence protein ComFB -
  GKC25_RS15810 (GKC25_15645) comFA 3086343..3087722 (-) 1380 WP_316250400.1 DEAD/DEAH box helicase Machinery gene
  GKC25_RS15815 (GKC25_15650) - 3087843..3088685 (-) 843 WP_034660152.1 DegV family protein -
  GKC25_RS15820 (GKC25_15655) degU 3088903..3089592 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  GKC25_RS15825 (GKC25_15660) degS 3089657..3090832 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  GKC25_RS15830 (GKC25_15665) - 3091054..3091722 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52657.88 Da        Isoelectric Point: 10.3183

>NTDB_id=401405 GKC25_RS15810 WP_316250400.1 3086343..3087722(-) (comFA) [Bacillus pumilus strain V17C11]
MNMDKAMELRQQLQSRHLLTAETRCSQSDLDWLEEKGFVIRTPAIERKANGLTCCRCGVSKKRYFAHTPCDMCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIEAIKKKSDLLIWAVCGAGKTEVLFYGIKYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMKRDVSRGQLEAIKIPLRFHKQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRILLFVPSISTMKKVTKVLREHRLNVEGVSADDPDRKQKVQHFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVIFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=401405 GKC25_RS15810 WP_316250400.1 3086343..3087722(-) (comFA) [Bacillus pumilus strain V17C11]
TTGAACATGGACAAAGCAATGGAACTAAGGCAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTCACA
GTCCGATTTGGATTGGCTGGAGGAGAAAGGGTTCGTCATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTACTT
GCTGTAGATGTGGTGTATCAAAAAAGCGGTACTTTGCCCACACTCCGTGTGACATGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAACATG
TCATACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCGTCCGAAAAATTGATCGAAGCGATAAAAA
AAAAATCTGACCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTCTTTTACGGAATTAAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACAGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGCCCTCAAAGGTTCCAAATAGCACCGCTAGTGATCGCCACAACTC
ATCAGTTGATGAGATACAAACATGCATTTGATGTGCTTATTATAGATGAAGTCGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCCTCTAAGAAAAT
GAAAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACAAACAACCGTTACCTGTCCCGT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCGACCATGAAGAAGGTAACGAAGGTTCTTAGAGA
ACACCGCTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCACTTCAGAGATTATAAAT
ACGATGTACTAGTTACAACCACCATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TATCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACAGCTGCAA
AAGAGTTTTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.084

98.693

0.534

Multiple sequence alignment